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Measurements of Electron Partitioning Between Cytochrome and Alternative Oxidase Pathways in Plant Tissues

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Plant Respiration and Internal Oxygen

Part of the book series: Methods in Molecular Biology ((MIMB,volume 1670))

Abstract

Plant respiration is characterized by the existence of the alternative oxidase pathway (AOP) that competes with cytochrome oxidase pathway (COP) for the electrons of the ubiquinone pool of the mitochondrial electron transport chain, thus reducing ATP synthesis. The oxygen (O2) isotope fractionation technique is the only available to determine the electron partitioning between the two pathways and their in vivo activities in plant tissues. In this chapter, the basis of the O2 isotope fractionation technique and its derived calculations are carefully explained together with a detailed description of the dual-inlet isotope ratio mass spectrometry (DI-IRMS) system and the protocol developed at the University of Balearic Islands. The key advantages of the DI-IRMS over other systems are highlighted as well as the potential problems of this technique. Among these problems, those associated with leakage, diffusion, and inhibitor treatments are noted and solutions to prevent, detect, and repair these problems are detailed.

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References

  1. van Dongen JT, Gupta KJ, Ramírez-Aguilar SJ et al (2011) Regulation of respiration in plants: a role for alternative metabolic pathways. J Plant Physiol 168:1434–1443

    Article  PubMed  Google Scholar 

  2. Gupta KJ, Neelwarne B, Mur LAJ (2015) Integrating classical and alternative pathways. In: Gupta KJ, Mur LAJ, Neelwarne B (eds) Alternative respiratory pathways in higher plants. John Wiley and Sons, Oxford, pp 1–26

    Chapter  Google Scholar 

  3. Moore AL, Siedow JN (1991) The regulation and nature of the cyanide-resistant alternative oxidase of plant-mitochondria. Biochim Biophys Acta 1059:121–140

    Article  CAS  PubMed  Google Scholar 

  4. Umbach AL, Siedow JN (1993) Covalent and noncovalent dimers of the cyanide resistant oxidase protein in higher plant mitochondria and their relationship to enzyme activity. Plant Physiol 103:845–854

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  5. Millar AH, Wiskich JT, Whelan J, Day DA (1993) Organic acid activation of the alternative oxidase of plant mitochondria. FEBS Lett 329:259–262

    Article  CAS  PubMed  Google Scholar 

  6. Hoefnagel MHN, Millar AH, Wiskich JT, Day DA (1995) Cytochrome and alternative respiratory pathways compete for electrons in the presence of pyruvate in soybean mitochondria. Arch Biochem Biophys 318:394–400

    Article  CAS  PubMed  Google Scholar 

  7. Ribas-Carbo M, Berry JA, Yakir D et al (1995) Electron partitioning between the cytochrome and alternative pathways in plant mitochondria. Plant Physiol 109:829–837

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  8. Day DA, Krab K, Lambers H et al (1996) The cyanide-resistant oxidase: to inhibit or not to inhibit, that is the question. Plant Physiol 110:1–2

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  9. Guy RD, Berry JA, Fogel ML, Hoering TC (1989) Differential fractionation of oxygen isotopes by cyanide resistant and cyanide-sensitive respiration in plants. Planta 177:483–491

    Article  CAS  PubMed  Google Scholar 

  10. Dawson TE, Brooks PD (2001) Fundamentals of stable isotope chemistry and measurement. In: Unkovich M et al (eds) Stable isotope techniques in the study of biological processes and functioning of ecosystems. Springer, Netherlands, pp 1–18

    Google Scholar 

  11. Ribas-Carbo M, Robinson SA, Giles L (2005) The application of the oxygen-isotope technique to assess respiratory pathway partitioning. In: Lambers H, Ribas-Carbo M (eds) Plant respiration: from cell to ecosystem, vol 18. Advances in photosynthesis and respiration series. Springer, Dordrecht, The Netherlands, pp 31–42

    Chapter  Google Scholar 

  12. Kornfeld A, Horton TW, Yakir D et al (2012) A field-compatible method for measuring alternative respiratory pathway activities in vivo using stable O2 isotopes. Plant Cell Environ 35:1518–1532

    Article  CAS  PubMed  Google Scholar 

  13. Cheah MH, Millar AH, Myers RC et al (2014) Online oxygen kinetic isotope effects using membrane inlet mass spectrometry can differentiate between oxidases for mechanistic studies and calculation of their contributions to oxygen consumption in whole tissues. Anal Chem 86:5171–5178

    Article  CAS  PubMed  Google Scholar 

  14. Del-Saz NF, Florez-Sarasa I, Clemente-Moreno MJ et al (2016) Salinity tolerance is related to cyanide-resistant alternative respiration in Medicago truncatula under sudden severe stress. Plant Cell Environ. doi:10.1111/pce.12776

  15. Florez-Sarasa I, Ribas-Carbo M, Del-Saz NF et al (2016) Unravelling the in vivo regulation and metabolic role of the alternative oxidase pathway in C3 species under photoinhibitory conditions. New Phytol. doi:10.1111/nph.14030

  16. Miller RE, Grant NM, Giles L et al (2011) In the heat of the night – alternative pathway respiration drives thermogenesis in Philodendron bipinnatifidum. New Phytol 189:1013–1026

    Article  CAS  PubMed  Google Scholar 

  17. Meier IC, Angert A, Falik O et al (2013) Increased root oxygen uptake in pea plants responding to non-self neighbors. Planta 238:577–586

    Article  CAS  PubMed  Google Scholar 

  18. Slater EC (1973) The mechanism of action of the respiratory inhibitor, antimycin. Biochim Biophys Acta 301:129–154

    Article  CAS  PubMed  Google Scholar 

  19. Huang L, Cobessi D, Tung EY, Berry EA (2005) Binding of the respiratory chain inhibitor antimycin to the mitochondrial bc1 complex: a new crystal structure reveals an altered intramolecular hydrogen-bonding pattern. J Mol Biol 351:573–597

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  20. Janes HW, Wiest SC (1982) Inhibition of O2 consumption resistant to cyanide and its development by n-propyl gallate and salicylhydroxamic acid. Plant Physiol 70:853–857

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  21. Moore AL, Shiba T, Young L et al (2013) Unraveling the heater: new insights into the structure of the alternative oxidase. Annu Rev Plant Biol 64:637–663

    Article  CAS  PubMed  Google Scholar 

  22. Florez-Sarasa ID, Bouma TJ, Medrano H et al (2007) Contribution of the cytochrome and alternative pathways to growth respiration and maintenance respiration in Arabidopsis thaliana. Physiol Plant 129:143–151

    Article  CAS  Google Scholar 

  23. Florez-Sarasa I, Flexas J, Rasmusson AG et al (2011) In vivo cytochrome and alternative pathway respiration in leaves of Arabidopsis thaliana plants with altered alternative oxidase under different light conditions. Plant Cell Environ 34:1373–1383

    Article  CAS  PubMed  Google Scholar 

  24. Florez-Sarasa I, Lambers H, Wang X et al (2014) The alternative respiratory pathway mediates carboxylate synthesis in white lupin cluster roots under phosphorus deprivation. Plant Cell Environ 37:922–928

    Article  CAS  PubMed  Google Scholar 

  25. Martí MC, Florez-Sarasa I, Camejo D et al (2011) Response of mitochondrial thioredoxin PsTrxo1, antioxidant enzymes, and respiration to salinity in pea (Pisum sativum, L.) leaves. J Exp Bot 62:3863–3874

    Article  PubMed  PubMed Central  Google Scholar 

  26. Florez-Sarasa I, Araújo WL, Wallström SV et al (2012) Light-responsive metabolite and transcript levels are maintained following a dark-adaptation period in leaves of Arabidopsis thaliana. New Phytol 195:136–148

    Article  CAS  PubMed  Google Scholar 

  27. Ribas-Carbo M, Lennon AM, Robinson SA et al (1997) The regulation of the electron partitioning between the cytochrome and alternative pathways in soybean cotyledon and root mitochondria. Plant Physiol 113:903–911

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  28. Angert A, Luz B (2001) Fractionation of oxygen isotopes by root respiration: implications for the isotopic composition of atmospheric O2. Geochim Cosmochim Acta 65:1695–1701

    Article  CAS  Google Scholar 

  29. Møller IM, Bérczi A, van der Plas LHW, Lambers H (1988) Measurement of the activity and capacity of the alternative pathway in intact plant tissues: identification of problems and possible solutions. Physiol Plant 72:642–649

    Article  Google Scholar 

  30. Whelan J, Millar AH, Day DA (1996) The alternative oxidase is encoded in a multigene family in soybean. Planta 198:197–201

    Article  CAS  PubMed  Google Scholar 

  31. Considine MJ, Holtzapffel RC, Day DA et al (2002) Molecular distinction between alternative oxidase from monocots and dicots. Plant Physiol 129:949–953

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  32. Ribas-Carbo M, Robinson SA, Meler-Gonzàlez MA et al (2000) Effects of light on respiration and oxygen isotope fractionation in soybean cotyledons. Plant Cell Environ 23:983–989

    Article  CAS  Google Scholar 

  33. Umbach AL, Gonzàlez-Meler MA, Sweet CR, Siedow JN (2002) Activation of the plant mitochondrial alternative oxidase: insights from site-directed mutagenesis. Biochim Biophys Acta 1554:118–128

    Article  CAS  PubMed  Google Scholar 

  34. Costa JH, McDonald AE, Arnholdt-Schmitt B, Fernandes de Melo D (2014) A classification scheme for alternative oxidases reveals the taxonomic distribution and evolutionary history of the enzyme in angiosperms. Mitochondrion 19:172–183

    Article  CAS  PubMed  Google Scholar 

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Acknowledgments

We would like to thank all the staff at the Serveis Cientifico-Tecnics of the Universitat de les Illes Balears for their help while running the experiments on the IRMS.

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Correspondence to Igor Florez-Sarasa .

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Del-Saz, N.F., Ribas-Carbo, M., Martorell, G., Fernie, A.R., Florez-Sarasa, I. (2017). Measurements of Electron Partitioning Between Cytochrome and Alternative Oxidase Pathways in Plant Tissues. In: Jagadis Gupta, K. (eds) Plant Respiration and Internal Oxygen. Methods in Molecular Biology, vol 1670. Humana Press, New York, NY. https://doi.org/10.1007/978-1-4939-7292-0_17

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  • DOI: https://doi.org/10.1007/978-1-4939-7292-0_17

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  • Publisher Name: Humana Press, New York, NY

  • Print ISBN: 978-1-4939-7291-3

  • Online ISBN: 978-1-4939-7292-0

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