Skip to main content

Optimization of Cell Spreading and Image Quality for the Study of Chromosomes in Plant Tissues

  • Protocol
  • First Online:
Book cover Plant Germline Development

Part of the book series: Methods in Molecular Biology ((MIMB,volume 1669))

Abstract

High-quality chromosome images of mitotic and meiotic cell divisions in plant tissues are inextricably connected with the technical control of cell spread preparations. Superb chromosome slides are the best for studying chromosome morphology and making karyotypes; they also are the best start for a successful fluorescent in situ hybridization experiment. In this study, we describe the essentials for fixation, enzymatic digestion, squash, spread, and dropping protocols for clean and well-differentiated nuclei and chromosome complements. In addition, we focus on the use of standard whole image processing for best sharpness, brightness and contrast adjustments, differentiation of heterochromatin/euchromatin, and high dynamic range imaging of big chromosomes. We also explain how to combine transparent layers or spot channels of different fluorescent images for making publication quality, full color photos.

This is a preview of subscription content, log in via an institution to check access.

Access this chapter

Protocol
USD 49.95
Price excludes VAT (USA)
  • Available as PDF
  • Read on any device
  • Instant download
  • Own it forever
eBook
USD 109.00
Price excludes VAT (USA)
  • Available as EPUB and PDF
  • Read on any device
  • Instant download
  • Own it forever
Softcover Book
USD 139.00
Price excludes VAT (USA)
  • Compact, lightweight edition
  • Dispatched in 3 to 5 business days
  • Free shipping worldwide - see info
Hardcover Book
USD 169.99
Price excludes VAT (USA)
  • Durable hardcover edition
  • Dispatched in 3 to 5 business days
  • Free shipping worldwide - see info

Tax calculation will be finalised at checkout

Purchases are for personal use only

Institutional subscriptions

References

  1. Sharma AK, Sharma A (2014) Chromosome techniques. Butterworth-Heinemann, Oxford

    Google Scholar 

  2. Singh RJ (2016) Plant cytogenetics, 3rd edn. CRC Press, Boca Raton, FL

    Book  Google Scholar 

  3. Guzzo F, Campagnari E, Levi M (2000) A new FISH protocol with increased sensitivity for physical mapping with short probes in plants. J Exp Bot 51:965–970

    Article  CAS  PubMed  Google Scholar 

  4. Devi J, Ko JM, Seo BB (2005) FISH and GISH: modern cytogenetic techniques. Ind J Biotechnol 4:304–315

    Google Scholar 

  5. Li J, Zhao X, Zhang X, Li M, Li J, Yuan J, Zhao X, Zhang X, Li M (2014) A simple and rapid method for visualization of male meiotic chromosomes in Arabidopsis thaliana. Biosci Biotechnol Biochem 78:1026–1028

    Article  CAS  PubMed  Google Scholar 

  6. Andres RJ, Kuraparthy V (2013) Development of an improved method of mitotic metaphase chromosome preparation compatible for fluorescence in situ hybridization in cotton. J Cotton Sci 17:149–156

    CAS  Google Scholar 

  7. Kirov I, Divashuk M, Van Laere K, Soloviev A, Khrustaleva L (2014) An easy “SteamDrop” method for high quality plant chromosome preparation. Mol Cytogenet 7:21

    Article  PubMed  PubMed Central  Google Scholar 

  8. Aliyeva-Schnorr L, Ma L, Houben A (2015) A fast air-dry dropping chromosome preparation method suitable for FISH in plants. J Vis Exp 106:e53470

    Google Scholar 

  9. Younis A, Ramzan F, Hwang Y-J, Lim K-B (2015) FISH and GISH: molecular cytogenetic tools and their applications in ornamental plants. Plant Cell Rep 34:1477–1488

    Article  CAS  PubMed  Google Scholar 

  10. Dang J, Zhao Q, Yang X, Chen Z, Xiang S, Liang G (2015) A modified method for preparing meiotic chromosomes based on digesting pollen mother cells in suspension. Mol Cytogenet 8:80

    Article  PubMed  PubMed Central  Google Scholar 

  11. Sedgewick G (2007) Quick Photoshop for Research. Springer, New York, NY

    Google Scholar 

  12. Kervrann C, Sanchez Sorzano CO, Acton ST, Olivo-Marin J-C, Unser M (2016) A guided tour of selected image processing and analysis methods for fluorescence and electron microscopy. IEEE J Sel Top Signal Process 10:6–30

    Article  Google Scholar 

  13. Rossner M (2004) What's in a picture? The temptation of image manipulation. J Cell Biol 166:11–15

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  14. Frow EK (2012) Drawing a line: setting guidelines for digital image processing in scientific journal articles. Soc Stud Sci 42:369–392

    Article  Google Scholar 

Download references

Acknowledgments

We thank Xianwen Ji for providing the images of Fig. 5.

Author information

Authors and Affiliations

Authors

Corresponding author

Correspondence to Hans de Jong .

Editor information

Editors and Affiliations

Rights and permissions

Reprints and permissions

Copyright information

© 2017 Springer Science+Business Media LLC

About this protocol

Cite this protocol

Kantama, L., Wijnker, E., de Jong, H. (2017). Optimization of Cell Spreading and Image Quality for the Study of Chromosomes in Plant Tissues. In: Schmidt, A. (eds) Plant Germline Development. Methods in Molecular Biology, vol 1669. Humana Press, New York, NY. https://doi.org/10.1007/978-1-4939-7286-9_12

Download citation

  • DOI: https://doi.org/10.1007/978-1-4939-7286-9_12

  • Published:

  • Publisher Name: Humana Press, New York, NY

  • Print ISBN: 978-1-4939-7285-2

  • Online ISBN: 978-1-4939-7286-9

  • eBook Packages: Springer Protocols

Publish with us

Policies and ethics