Abstract
Single-molecule imaging in living cells can provide unique information about biological processes. Bacteria offer some particular challenges for single-molecule imaging due to their small size, only slightly larger than the diffraction limit of visible light. Here, we describe how reliable and reproducible single-molecule data can be obtained for a transmembrane protein in the Gram-negative bacterium Escherichia coli by using live-cell fluorescence microscopy. Fluorescent labeling of a protein by genetic fusion, cell culturing, sample preparation, imaging, and data analysis are discussed.
Access this chapter
Tax calculation will be finalised at checkout
Purchases are for personal use only
References
Green MR, Sambrook J (2012) Molecular cloning, 4th edn. Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY
Gibson DG, Young L, Chuang RY, Venter JC, Hutchison CA 3rd, Smith HO (2009) Enzymatic assembly of DNA molecules up to several hundred kilobases. Nat Methods 6(5):343–345. doi:10.1038/nmeth.1318
Sharan SK, Thomason LC, Kuznetsov SG, Court DL (2009) Recombineering: a homologous recombination-based method of genetic engineering. Nat Protoc 4(2):206–223. doi:10.1038/nprot.2008.227
Jiang Y, Chen B, Duan C, Sun B, Yang J, Yang S (2015) Multigene editing in the Escherichia coli genome via the CRISPR-Cas9 system. Appl Environ Microbiol 81(7):2506–2514. doi:10.1128/AEM.04023-14
Jaqaman K, Loerke D, Mettlen M, Kuwata H, Grinstein S, Schmid SL, Danuser G (2008) Robust single-particle tracking in live-cell time-lapse sequences. Nat Methods 5(8):695–702. doi:10.1038/nmeth.1237
Oswald F, ELM Bank, Bollen YJ, Peterman EJ (2014) Imaging and quantification of trans-membrane protein diffusion in living bacteria. Phys Chem Chem Phys 16(25):12625–12634. doi:10.1039/c4cp00299g
Dinh T, Bernhardt TG (2011) Using superfolder green fluorescent protein for periplasmic protein localization studies. J Bacteriol 193(18):4984–4987. doi:10.1128/JB.00315-11
Oswald F, Varadarajan A, Lill H, Peterman EJ, Bollen YJ (2016) MreB-dependent organization of the E. coli cytoplasmic membrane controls membrane protein diffusion. Biophys J 110(5):1139–1149. doi:10.1016/j.bpj.2016.01.010
Guzman LM, Belin D, Carson MJ, Beckwith J (1995) Tight regulation, modulation, and high-level expression by vectors containing the arabinose PBAD promoter. J Bacteriol 177(14):4121–4130
Author information
Authors and Affiliations
Corresponding author
Editor information
Editors and Affiliations
Rights and permissions
Copyright information
© 2018 Springer Science+Business Media LLC
About this protocol
Cite this protocol
Varadarajan, A., Oswald, F., Bollen, Y.J.M. (2018). Single-Molecule Imaging of Escherichia coli Transmembrane Proteins. In: Peterman, E. (eds) Single Molecule Analysis. Methods in Molecular Biology, vol 1665. Humana Press, New York, NY. https://doi.org/10.1007/978-1-4939-7271-5_7
Download citation
DOI: https://doi.org/10.1007/978-1-4939-7271-5_7
Published:
Publisher Name: Humana Press, New York, NY
Print ISBN: 978-1-4939-7270-8
Online ISBN: 978-1-4939-7271-5
eBook Packages: Springer Protocols