Abstract
Extracellular vesicles (EVs) are a heterogeneous group of membrane-encapsulated particles with different ranges of size, density, and cargo. Various types of RNA including mRNA are enclosed within EVs and can serve as novel biomarkers for disease detection and patient management. Ultracentrifugation, precipitation , antibody-based capture and filter-based methods are available as in-house laboratory procedures or commercially available kits to isolate EVs. Here, we describe a filter-based method for EV mRNA isolation that is designed for parallel processing of large sample numbers.
This is a preview of subscription content, log in via an institution.
Buying options
Tax calculation will be finalised at checkout
Purchases are for personal use only
Learn about institutional subscriptionsReferences
Miranda KC, Bond DT, McKee M, Skog J, Paunescu TG, Da Silva N et al (2010) Nucleic acids within urinary exosomes/microvesicles are potential biomarkers for renal disease. Kidney Int 78(2):191–199. doi:10.1038/ki.2010.106
Thery C, Amigorena S, Raposo G, Clayton A (2006) Isolation and characterization of exosomes from cell culture supernatants and biological fluids. Curr Protoc Cell Biol Chapter 3, Unit 3.22
Rider MA, Hurwitz SN, Meckes Jr DG (2016) ExtraPEG: a polyethylene glycol-based method for enrichment of extracellular vesicles. Sci Rep 6:23978. doi:10.1038/srep23978
Grant R, Ansa-Addo E, Stratton D, Antwi-Baffour S, Jorfi S et al (2011) A filtration-based protocol to isolate human plasma membrane-derived vesicles and exosomes from blood plasma. J Immunol Methods 371(1-2):143–151
Aoki J, Ohashi K, Mitsuhashi M, Murakami T, Oakes M, Kobayashi T, Doki N, Kakihana K, Sakamaki H (2014) Posttransplantation bone marrow assessment by quantifying hematopoietic cell-derived mRNAs in plasma exosomes/microvesicles. Clin Chem 60(4):675–682
Murakami T, Oakes M, Ogura M, Tovar V, Yamamoto C, Mitsuhashi M (2014) Development of glomerulus-, tubule-, and collecting duct-specific mRNA assay in human urinary exosomes and microvesicles. PLoS One 9(10):e109074. doi:10.1371/journal.pone.0109074
Miranda KC, Bond DT, Levin JZ, Adiconis X, Sivachenko A et al (2014) Massively parallel sequencing of human urinary exosome/microvesicle RNA reveals a predominance of non-coding RNA. PLoS One 9(5):e96094. doi:10.1371/journal.pone.0096094
Enderle D, Spiel A, Coticchia CM, Berghoff E, Mueller R, Schumberger M et al (2015) Characterization of RNA from exosomes and other extracellular vesicles isolated by a novel spin column-based method. PLoS One 10(8):e0136133. doi:10.1371/journal.pone.0136133
Oosthuyzen W, Sime NEL, Ivy JR, Turtle EJ, Street JM, Pound J et al (2013) Quantification of human urinary exosomes by nanoparticle tracking analysis. J Physiol 591(23):5833–5842
Zubiri I, Posada-Ayala M, Sanz-Maroto A, Calvo E, Martin-Lorenzo M, Gonzalez-Calero L, de la Cuesta F et al (2014) Diabetic nephropathy induces changes in the proteome of human urinary exosomes as revealed by label-free comparative analysis. J Proteomics 96:92–102
Tang MK, Wong AS (2015) Exosomes: emerging biomarkers and targets for ovarian cancer. Cancer Lett 367(1):26–33
Tkach M, Clotilde T (2016) Communication by extracellular vesicles: where we are and where we need to go. Cell 164:1226–1232
Author information
Authors and Affiliations
Corresponding author
Editor information
Editors and Affiliations
Rights and permissions
Copyright information
© 2017 Springer Science+Business Media LLC
About this protocol
Cite this protocol
Yamamoto, C.M., Murakami, T., Ng, SW. (2017). Filter-Based Extracellular Vesicle mRNA Isolation and High-Throughput Gene Expression Analysis. In: Kuo, W., Jia, S. (eds) Extracellular Vesicles. Methods in Molecular Biology, vol 1660. Humana Press, New York, NY. https://doi.org/10.1007/978-1-4939-7253-1_6
Download citation
DOI: https://doi.org/10.1007/978-1-4939-7253-1_6
Published:
Publisher Name: Humana Press, New York, NY
Print ISBN: 978-1-4939-7251-7
Online ISBN: 978-1-4939-7253-1
eBook Packages: Springer Protocols