Skip to main content

Cloning and Characterization of Argonaute Genes in Tomato

  • Protocol
  • First Online:
Plant Argonaute Proteins

Part of the book series: Methods in Molecular Biology ((MIMB,volume 1640))

  • 1646 Accesses

Abstract

Argonaute (AGO) proteins are core elements in plant posttranscriptional RNA silencing pathways. The identification and functional characterization of tomato (Solanum lycopersicum) AGOs will help to better understand RNA silencing-based posttranscriptional regulation in fleshy fruits. Here we describe how to identify and clone SlAGO genes, as well as the methodology for their functional characterization.

This is a preview of subscription content, log in via an institution to check access.

Access this chapter

Protocol
USD 49.95
Price excludes VAT (USA)
  • Available as PDF
  • Read on any device
  • Instant download
  • Own it forever
eBook
USD 99.00
Price excludes VAT (USA)
  • Available as EPUB and PDF
  • Read on any device
  • Instant download
  • Own it forever
Softcover Book
USD 129.99
Price excludes VAT (USA)
  • Compact, lightweight edition
  • Dispatched in 3 to 5 business days
  • Free shipping worldwide - see info
Hardcover Book
USD 179.99
Price excludes VAT (USA)
  • Durable hardcover edition
  • Dispatched in 3 to 5 business days
  • Free shipping worldwide - see info

Tax calculation will be finalised at checkout

Purchases are for personal use only

Institutional subscriptions

References

  1. Aukerman MJ, Sakai H (2003) Regulation of flowering time and floral organ identity by a MicroRNA and its APETALA2-like target genes. Plant Cell 15(11):2730–2741. doi:10.1105/tpc.016238

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  2. Emery JF, Floyd SK, Alvarez J, Eshed Y, Hawker NP, Izhaki A, Baum SF, Bowman JL (2003) Radial patterning of Arabidopsis shoots by class III HD-ZIP and KANADI genes. Curr Biol 13(20):1768–1774. doi:10.1016/j.cub.2003.09.035

    Article  CAS  PubMed  Google Scholar 

  3. Palatnik JF, Allen E, Wu X, Schommer C, Schwab R, Carrington JC, Weigel D (2003) Control of leaf morphogenesis by microRNAs. Nature 425(6955):257–263. doi:10.1038/nature01958

    Article  CAS  PubMed  Google Scholar 

  4. Xie Z, Kasschau KD, Carrington JC (2003) Negative feedback regulation of dicer-Like1 in Arabidopsis by microRNA-guided mRNA degradation. Curr Biol 13(9):784–789. doi:10.1016/S0960-9822(03)00281-1

    Article  CAS  PubMed  Google Scholar 

  5. Vaucheret H, Vazquez F, Crete P, Bartel DP (2004) The action of ARGONAUTE1 in the miRNA pathway and its regulation by the miRNA pathway are crucial for plant development. Genes Dev 18(10):1187–1197. doi:10.1101/gad.1201404

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  6. Tolia NH, Joshua-Tor L (2007) Slicer and the argonautes. Nat Chem Biol 3(1):36–43. doi:10.1038/nchembio848

    Article  CAS  PubMed  Google Scholar 

  7. Hutvagner G, Simard MJ (2008) Argonaute proteins: key players in RNA silencing. Nat Rev Mol Cell Biol 9(1):22–32. doi:10.1038/nrm2321

    Article  CAS  PubMed  Google Scholar 

  8. Yigit E, Batista PJ, Bei Y, Pang KM, Chen CC, Tolia NH, Joshua-Tor L, Mitani S, Simard MJ, Mello CC (2006) Analysis of the C. elegans Argonaute family reveals that distinct Argonautes act sequentially during RNAi. Cell 127(4):747–757. doi:10.1016/j.cell.2006.09.033

    Article  CAS  PubMed  Google Scholar 

  9. Vaucheret H (2008) Plant ARGONAUTES. Trends Plant Sci 13(7):350–358. doi:10.1016/j.tplants.2008.04.007

    Article  CAS  PubMed  Google Scholar 

  10. Xian Z, Yang Y, Huang W, Tang N, Wang X, Li Z (2013) Molecular cloning and characterisation of SlAGO family in tomato. BMC Plant Biol 13:126. doi:10.1186/1471-2229-13-126

    Article  PubMed  PubMed Central  Google Scholar 

  11. Xian Z, Huang W, Yang Y, Tang N, Zhang C, Ren M, Li Z (2014) miR168 influences phase transition, leaf epinasty, and fruit development via SlAGO1s in tomato. J Exp Bot 65(22):6655–6666. doi:10.1093/jxb/eru387

    Article  CAS  PubMed  Google Scholar 

  12. Zhang C, Xian Z, Huang W, Li Z (2015) Evidence for the biological function of miR403 in tomato development. Sci Hortic 197:619–626. doi:10.1016/j.scienta.2015.10.027

    Article  CAS  Google Scholar 

  13. Huang W, Xian Z, Hu G, Li Z (2016) SlAGO4A, a core factor of RNA-directed DNA methylation (RdDM) pathway, plays an important role under salt and drought stress in tomato. Mol Breed 36(3):1–13. doi:10.1007/s11032-016-0439-1

    Google Scholar 

  14. Hendelman A, Kravchik M, Stav R, Zik M, Lugassi N, Arazi T (2013) The developmental outcomes of P0-mediated ARGONAUTE destabilization in tomato. Planta 237(1):363–377. doi:10.1007/s00425-012-1778-8

    Article  CAS  PubMed  Google Scholar 

  15. Meissner R, Jacobson Y, Melamed S, Levyatuv S, Shalev G, Ashri A, Elkind Y, Levy A (1997) A new model system for tomato genetics. Plant J 12(6):1465–1472. doi:10.1046/j.1365-313x.1997.12061465.x

    Article  CAS  Google Scholar 

  16. Kato K, Matsumoto T, Koiwai S, Mizusaki S, Nishida K, Nogushi M, Tamaki E (1972) Liquid suspension culture of tobaco cells. In: Terui G (ed) Ferment technology today. Society of Fermentation Technology, Osaka, pp 689–695

    Google Scholar 

  17. Hellens RP, Edwards EA, Leyland NR, Bean S, Mullineaux PM (2000) pGreen: a versatile and flexible binary Ti vector for Agrobacterium-mediated plant transformation. Plant Mol Biol 42(6):819–832. doi:10.1023/A:1006496308160

    Article  CAS  PubMed  Google Scholar 

  18. Wang H, Jones B, Li Z, Frasse P, Delalande C, Regad F, Chaabouni S, Latche A, Pech JC, Bouzayen M (2005) The tomato Aux/IAA transcription factor IAA9 is involved in fruit development and leaf morphogenesis. Plant Cell 17(10):2676–2692. doi:10.1105/tpc.105.033415

    Article  CAS  PubMed  PubMed Central  Google Scholar 

Download references

Acknowledgments

This work is supported by the National Research and Development Program (2016YFD0400101) and the National Natural Science Foundation of China (31501770).

Author information

Authors and Affiliations

Authors

Corresponding author

Correspondence to Zhengguo Li .

Editor information

Editors and Affiliations

Rights and permissions

Reprints and permissions

Copyright information

© 2017 Springer Science+Business Media LLC

About this protocol

Cite this protocol

Xian, Z., Yan, F., Li, Z. (2017). Cloning and Characterization of Argonaute Genes in Tomato. In: Carbonell, A. (eds) Plant Argonaute Proteins. Methods in Molecular Biology, vol 1640. Humana Press, New York, NY. https://doi.org/10.1007/978-1-4939-7165-7_13

Download citation

  • DOI: https://doi.org/10.1007/978-1-4939-7165-7_13

  • Published:

  • Publisher Name: Humana Press, New York, NY

  • Print ISBN: 978-1-4939-7164-0

  • Online ISBN: 978-1-4939-7165-7

  • eBook Packages: Springer Protocols

Publish with us

Policies and ethics