Skip to main content

Creation of Antigen-Dependent β-Lactamase Fusion Protein Tethered by Circularly Permuted Antibody Variable Domains

  • Protocol
  • First Online:
Synthetic Protein Switches

Part of the book series: Methods in Molecular Biology ((MIMB,volume 1596))

  • 1740 Accesses

Abstract

Antibody-based molecular switches that are able to recognize a range of exogenous antigens can be highly useful as a versatile biosensor. However, regulating the catalytic activity of enzymes by antibodies is still hard to achieve. Here, we describe a design method of unique antibody variable region Fv introduced with two circular permutations, called Clampbody. By tethering the Clampbody to a circularly permuted TEM-1 β-lactamase (BLA), we successfully constructed a genetically encoded molecular switch Cbody-cpBLA that shows antigen-dependent catalytic activity.

This is a preview of subscription content, log in via an institution to check access.

Access this chapter

Protocol
USD 49.95
Price excludes VAT (USA)
  • Available as PDF
  • Read on any device
  • Instant download
  • Own it forever
eBook
USD 99.00
Price excludes VAT (USA)
  • Available as EPUB and PDF
  • Read on any device
  • Instant download
  • Own it forever
Softcover Book
USD 129.99
Price excludes VAT (USA)
  • Compact, lightweight edition
  • Dispatched in 3 to 5 business days
  • Free shipping worldwide - see info
Hardcover Book
USD 129.99
Price excludes VAT (USA)
  • Durable hardcover edition
  • Dispatched in 3 to 5 business days
  • Free shipping worldwide - see info

Tax calculation will be finalised at checkout

Purchases are for personal use only

Institutional subscriptions

References

  1. Stains CI, Furman JL, Porter JR, Rajagopal S, Li Y, Wyatt RT, Ghosh I (2010) A general approach for receptor and antibody-targeted detection of native proteins utilizing split-luciferase reassembly. ACS Chem Biol 5:943–952

    Article  CAS  Google Scholar 

  2. Alderson RF, Toki BE, Roberge M, Geng W, Basler J, Chin R, Liu A, Ueda R, Hodges D, Escandon E, Chen T, Kanavarioti T, Babé L, Senter PD, Fox JA, Schellenberger V (2006) Characterization of a CC49-based single-chain fragment-β-lactamase fusion protein for antibody-directed enzyme prodrug therapy (ADEPT). Bioconjug Chem 17:410–418

    Article  CAS  Google Scholar 

  3. Schumacher FF, Sanchania VA, Tolner B, Wright ZVF, Ryan CP, Smith MEB, Ward JM, Caddick S, Kay CWM, Aeppli G, Chester KA, Baker JR (2013) Homogeneous antibody fragment conjugation by disulfide bridging introduces ‘spinostics’. Sci Rep 3:1525

    Article  Google Scholar 

  4. Yokozeki T, Ueda H, Arai R, Mahoney W, Nagamune T (2002) A homogeneous noncompetitive immunoassay for the detection of small haptens. Anal Chem 74:2500–2504

    Article  CAS  Google Scholar 

  5. Ueda H, Yokozeki T, Arai R, Tsumoto K, Kumagai I, Nagamune T (2003) An optimized homogeneous noncompetitive immunoassay based on the antigen-driven enzymatic complementation. J Immunol Methods 279(1–2):209–218

    Article  CAS  Google Scholar 

  6. Kojima M, Iwai H, Dong J, Lim S-L, Ito S, Okumura K, Ihara M, Ueda H (2011) Activation of circularly permutated β-lactamase tethered to antibody domains by specific small molecules. Bioconjug Chem 22:633–641

    Article  CAS  Google Scholar 

  7. Guntas G, Mitchell SF, Ostermeier M (2004) A Molecular switch created by in vitro recombination of nonhomologous genes. Chem Biol 11:1483–1487

    Article  CAS  Google Scholar 

  8. Guntas G, Mansell TJ, Kim JR, Ostermeier M (2005) Directed evolution of protein switches and their application to the creation of ligand-binding proteins. Proc Natl Acad Sci U S A 102:11224–11229

    Article  CAS  Google Scholar 

  9. Nicholes N, Date A, Beaujean P, Hauk P, Kanwar M, Ostermeier M (2016) Modular protein switches derived from antibody mimetic proteins. Protein Eng Des Sel 29:77–85

    Article  CAS  Google Scholar 

  10. Iwai H, Kojima-Misaizu M, Dong J, Ueda H (2016) Creation of a ligand-dependent enzyme by fusing circularly permuted antibody variable region domains. Bioconjug Chem 27:868–873

    Article  CAS  Google Scholar 

  11. Brinkmann U, di Carlo A, Vasmatzis G, Kurochkina N, Beers R, Lee B, Pastan I (1997) Stabilization of a recombinant Fv fragment by base-loop interconnection and V(H)-V(L) permutation. J Mol Biol 268:107–117

    Article  CAS  Google Scholar 

  12. Motlagh HN, Wrabl JO, Li J, Hilser VJ (2014) The ensemble nature of allostery. Nature 508:331–339

    Article  CAS  Google Scholar 

  13. Choi JH, San A, Ostermeier M (2013) Non-allosteric enzyme switches possess larger effector-induced changes in thermodynamic stability than their non-switch analogs. Protein Sci 22:475–485

    Article  CAS  Google Scholar 

  14. Choi JH, Ostermeier M (2015) Rational design of a fusion protein to exhibit disulfide-mediated logic gate behavior. ACS Synth Biol 4:400–406

    Article  CAS  Google Scholar 

  15. Choi JH, Laurent AH, Hilser VJ, Ostermeier M (2015) Design of protein switches based on an ensemble model of allostery. Nat Commun 6:6968

    Article  CAS  Google Scholar 

  16. Ohmuro-Matsuyama Y, Chung CI, Ueda H (2013) Demonstration of protein-fragment complementation assay using purified firefly luciferase fragments. BMC Biotechnol 13:31

    Article  CAS  Google Scholar 

  17. Ohiro Y, Ueda H, Shibata N, Nagamune T (2007) Enhanced fluorescence resonance energy transfer immunoassay with improved sensitivity based on the Fab’-based immunoconjugates. Anal Biochem 360:266–272

    Article  CAS  Google Scholar 

  18. Chung CI, Makino R, Dong J, Ueda H (2015) Open flower fluoroimmunoassay: a general method to make fluorescent protein-based immunosensor probes. Anal Chem 87:3513–3519

    Article  CAS  Google Scholar 

  19. Ohmuro-Matsuyama Y, Hara Y, Ueda H (2014) Improved protein-protein interaction assay FlimPIA by the entrapment of luciferase conformation. Anal Chem 86:2013–2018

    Article  CAS  Google Scholar 

  20. Kurihara M, Ohmuro-Matsuyama Y, Ayabe K, Yamashita T, Yamaji H, Ueda H (2016) Ultra sensitive firefly luciferase-based protein-protein interaction assay (FlimPIA) attained by hinge region engineering and optimized reaction conditions. Biotechnol J 11:91–99

    Article  CAS  Google Scholar 

  21. de Wildt RM, Mundy CR, Gorick BD, Tomlinson IM (2000) Antibody arrays for high-throughput screening of antibody-antigen interactions. Nat Biotechnol 18:989–994

    Article  Google Scholar 

  22. Lim S-L, Ichinose H, Shinoda T, Ueda H (2007) Noncompetitive detection of low molecular weight peptides by open sandwich immunoassay. Anal Chem 79:6193–6200

    Article  CAS  Google Scholar 

  23. Ke W, Laurent AH, Armstrong MD, Chen Y, Smith WE, Liang J, Wright CM, Ostermeier M, van den Akker F (2012) Structure of an engineered β-lactamase maltose binding protein fusion protein: insights into heterotropic allosteric regulation. PLoS One 7:e39168

    Article  CAS  Google Scholar 

  24. Wright CM, Majumdar A, Tolman JR, Ostermeier M (2010) NMR characterization of an engineered domain fusion between maltose binding protein and TEM1 beta-lactamase provides insight into its structure and allosteric mechanism. Proteins 78:1423–1430

    CAS  Google Scholar 

  25. Tsumoto K, Shinoki K, Kondo H, Uchikawa M, Juji T, Kumagai I (1998) Highly efficient recovery of functional single-chain Fv fragments from inclusion bodies overexpressed in Escherichia coli by controlled introduction of oxidizing reagent—application to a human single-chain Fv fragment. J Immunol Methods 219:119–129

    Article  CAS  Google Scholar 

Download references

Acknowledgment

We thank Tatsuya Shinoda of Kyowa Medex Co. for generously allowing the use of the genes derived from KTM-219 IgG. This study was supported by Grant-in-Aid for Scientific Research (Grants 24360336 and 15H04191 to H.U. and Grant 46420793 to J.D.) from JSPS, Japan, and partly by Strategic International Collaborative Research Program, Japan Science and Technology Agency (JST).

Author information

Authors and Affiliations

Authors

Corresponding author

Correspondence to Hiroshi Ueda .

Editor information

Editors and Affiliations

Rights and permissions

Reprints and permissions

Copyright information

© 2017 Springer Science+Business Media LLC

About this protocol

Cite this protocol

Iwai, H., Kojima-Misaizu, M., Dong, J., Ueda, H. (2017). Creation of Antigen-Dependent β-Lactamase Fusion Protein Tethered by Circularly Permuted Antibody Variable Domains. In: Stein, V. (eds) Synthetic Protein Switches. Methods in Molecular Biology, vol 1596. Humana Press, New York, NY. https://doi.org/10.1007/978-1-4939-6940-1_10

Download citation

  • DOI: https://doi.org/10.1007/978-1-4939-6940-1_10

  • Published:

  • Publisher Name: Humana Press, New York, NY

  • Print ISBN: 978-1-4939-6938-8

  • Online ISBN: 978-1-4939-6940-1

  • eBook Packages: Springer Protocols

Publish with us

Policies and ethics