Abstract
Antibody-based molecular switches that are able to recognize a range of exogenous antigens can be highly useful as a versatile biosensor. However, regulating the catalytic activity of enzymes by antibodies is still hard to achieve. Here, we describe a design method of unique antibody variable region Fv introduced with two circular permutations, called Clampbody. By tethering the Clampbody to a circularly permuted TEM-1 β-lactamase (BLA), we successfully constructed a genetically encoded molecular switch Cbody-cpBLA that shows antigen-dependent catalytic activity.
Access this chapter
Tax calculation will be finalised at checkout
Purchases are for personal use only
References
Stains CI, Furman JL, Porter JR, Rajagopal S, Li Y, Wyatt RT, Ghosh I (2010) A general approach for receptor and antibody-targeted detection of native proteins utilizing split-luciferase reassembly. ACS Chem Biol 5:943–952
Alderson RF, Toki BE, Roberge M, Geng W, Basler J, Chin R, Liu A, Ueda R, Hodges D, Escandon E, Chen T, Kanavarioti T, Babé L, Senter PD, Fox JA, Schellenberger V (2006) Characterization of a CC49-based single-chain fragment-β-lactamase fusion protein for antibody-directed enzyme prodrug therapy (ADEPT). Bioconjug Chem 17:410–418
Schumacher FF, Sanchania VA, Tolner B, Wright ZVF, Ryan CP, Smith MEB, Ward JM, Caddick S, Kay CWM, Aeppli G, Chester KA, Baker JR (2013) Homogeneous antibody fragment conjugation by disulfide bridging introduces ‘spinostics’. Sci Rep 3:1525
Yokozeki T, Ueda H, Arai R, Mahoney W, Nagamune T (2002) A homogeneous noncompetitive immunoassay for the detection of small haptens. Anal Chem 74:2500–2504
Ueda H, Yokozeki T, Arai R, Tsumoto K, Kumagai I, Nagamune T (2003) An optimized homogeneous noncompetitive immunoassay based on the antigen-driven enzymatic complementation. J Immunol Methods 279(1–2):209–218
Kojima M, Iwai H, Dong J, Lim S-L, Ito S, Okumura K, Ihara M, Ueda H (2011) Activation of circularly permutated β-lactamase tethered to antibody domains by specific small molecules. Bioconjug Chem 22:633–641
Guntas G, Mitchell SF, Ostermeier M (2004) A Molecular switch created by in vitro recombination of nonhomologous genes. Chem Biol 11:1483–1487
Guntas G, Mansell TJ, Kim JR, Ostermeier M (2005) Directed evolution of protein switches and their application to the creation of ligand-binding proteins. Proc Natl Acad Sci U S A 102:11224–11229
Nicholes N, Date A, Beaujean P, Hauk P, Kanwar M, Ostermeier M (2016) Modular protein switches derived from antibody mimetic proteins. Protein Eng Des Sel 29:77–85
Iwai H, Kojima-Misaizu M, Dong J, Ueda H (2016) Creation of a ligand-dependent enzyme by fusing circularly permuted antibody variable region domains. Bioconjug Chem 27:868–873
Brinkmann U, di Carlo A, Vasmatzis G, Kurochkina N, Beers R, Lee B, Pastan I (1997) Stabilization of a recombinant Fv fragment by base-loop interconnection and V(H)-V(L) permutation. J Mol Biol 268:107–117
Motlagh HN, Wrabl JO, Li J, Hilser VJ (2014) The ensemble nature of allostery. Nature 508:331–339
Choi JH, San A, Ostermeier M (2013) Non-allosteric enzyme switches possess larger effector-induced changes in thermodynamic stability than their non-switch analogs. Protein Sci 22:475–485
Choi JH, Ostermeier M (2015) Rational design of a fusion protein to exhibit disulfide-mediated logic gate behavior. ACS Synth Biol 4:400–406
Choi JH, Laurent AH, Hilser VJ, Ostermeier M (2015) Design of protein switches based on an ensemble model of allostery. Nat Commun 6:6968
Ohmuro-Matsuyama Y, Chung CI, Ueda H (2013) Demonstration of protein-fragment complementation assay using purified firefly luciferase fragments. BMC Biotechnol 13:31
Ohiro Y, Ueda H, Shibata N, Nagamune T (2007) Enhanced fluorescence resonance energy transfer immunoassay with improved sensitivity based on the Fab’-based immunoconjugates. Anal Biochem 360:266–272
Chung CI, Makino R, Dong J, Ueda H (2015) Open flower fluoroimmunoassay: a general method to make fluorescent protein-based immunosensor probes. Anal Chem 87:3513–3519
Ohmuro-Matsuyama Y, Hara Y, Ueda H (2014) Improved protein-protein interaction assay FlimPIA by the entrapment of luciferase conformation. Anal Chem 86:2013–2018
Kurihara M, Ohmuro-Matsuyama Y, Ayabe K, Yamashita T, Yamaji H, Ueda H (2016) Ultra sensitive firefly luciferase-based protein-protein interaction assay (FlimPIA) attained by hinge region engineering and optimized reaction conditions. Biotechnol J 11:91–99
de Wildt RM, Mundy CR, Gorick BD, Tomlinson IM (2000) Antibody arrays for high-throughput screening of antibody-antigen interactions. Nat Biotechnol 18:989–994
Lim S-L, Ichinose H, Shinoda T, Ueda H (2007) Noncompetitive detection of low molecular weight peptides by open sandwich immunoassay. Anal Chem 79:6193–6200
Ke W, Laurent AH, Armstrong MD, Chen Y, Smith WE, Liang J, Wright CM, Ostermeier M, van den Akker F (2012) Structure of an engineered β-lactamase maltose binding protein fusion protein: insights into heterotropic allosteric regulation. PLoS One 7:e39168
Wright CM, Majumdar A, Tolman JR, Ostermeier M (2010) NMR characterization of an engineered domain fusion between maltose binding protein and TEM1 beta-lactamase provides insight into its structure and allosteric mechanism. Proteins 78:1423–1430
Tsumoto K, Shinoki K, Kondo H, Uchikawa M, Juji T, Kumagai I (1998) Highly efficient recovery of functional single-chain Fv fragments from inclusion bodies overexpressed in Escherichia coli by controlled introduction of oxidizing reagent—application to a human single-chain Fv fragment. J Immunol Methods 219:119–129
Acknowledgment
We thank Tatsuya Shinoda of Kyowa Medex Co. for generously allowing the use of the genes derived from KTM-219 IgG. This study was supported by Grant-in-Aid for Scientific Research (Grants 24360336 and 15H04191 to H.U. and Grant 46420793 to J.D.) from JSPS, Japan, and partly by Strategic International Collaborative Research Program, Japan Science and Technology Agency (JST).
Author information
Authors and Affiliations
Corresponding author
Editor information
Editors and Affiliations
Rights and permissions
Copyright information
© 2017 Springer Science+Business Media LLC
About this protocol
Cite this protocol
Iwai, H., Kojima-Misaizu, M., Dong, J., Ueda, H. (2017). Creation of Antigen-Dependent β-Lactamase Fusion Protein Tethered by Circularly Permuted Antibody Variable Domains. In: Stein, V. (eds) Synthetic Protein Switches. Methods in Molecular Biology, vol 1596. Humana Press, New York, NY. https://doi.org/10.1007/978-1-4939-6940-1_10
Download citation
DOI: https://doi.org/10.1007/978-1-4939-6940-1_10
Published:
Publisher Name: Humana Press, New York, NY
Print ISBN: 978-1-4939-6938-8
Online ISBN: 978-1-4939-6940-1
eBook Packages: Springer Protocols