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Peroxisomal Membrane and Matrix Protein Import Using a Semi-Intact Mammalian Cell System

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Peroxisomes

Part of the book series: Methods in Molecular Biology ((MIMB,volume 1595))

Abstract

Peroxisomes are essential intracellular organelles that catalyze a number of essential metabolic pathways including β-oxidation of very long chain fatty acids, synthesis of plasmalogen, bile acids, and generation and degradation of hydrogen peroxide. These peroxisomal functions are accomplished by strictly and spatiotemporally regulated compartmentalization of the enzymes catalyzing these reactions. Defects in peroxisomal protein import result in inherited peroxisome biogenesis disorders in humans. Peroxisomal matrix and membrane proteins are synthesized on free ribosomes and transported to peroxisomes in a manner dependent on their specific targeting signals and their receptors. Peroxisomal protein import can be analyzed using a semi-intact assay system, in which targeting efficiency is readily monitored by immunofluorescence microscopy. Furthermore, cytosolic factors required for peroxisomal protein import can be manipulated, suggesting that the semi-intact system is a useful and convenient system to uncover the molecular mechanisms of peroxisomal protein import.

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References

  1. Fujiki Y (2000) Peroxisome biogenesis and peroxisome biogenesis disorders. FEBS Lett 476:42–46

    Article  CAS  PubMed  Google Scholar 

  2. Gould SJ, Valle D (2000) Peroxisome biogenesis disorders: genetics and cell biology. Trends Genet 16:340–345

    Article  CAS  PubMed  Google Scholar 

  3. Waterham HR, Ferdinandusse S, Wanders RJA (2015) Human disorders of peroxisome metabolism and biogenesis. Biochim Biophys Acta 1863:922–933

    Article  PubMed  Google Scholar 

  4. Fujiki Y, Okumoto K, Mukai S, Honsho M, Tamura S (2014) Peroxisome biogenesis in mammalian cells. Front Physiol 5: Article 307

    Google Scholar 

  5. Yagita Y, Hiromasa T, Fujiki Y (2013) Tail-anchored PEX26 targets peroxisomes via a PEX19-dependent and TRC40-independent class I pathway. J Cell Biol 200:651–666

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  6. Matsuzaki T, Fujiki Y (2008) The peroxisomal membrane protein import receptor Pex3p is directly transported to peroxisomes by a novel Pex19p- and Pex16p-dependent pathway. J Cell Biol 183:1275–1286

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  7. Liu X, Ma C, Subramani S (2012) Recent advances in peroxisomal matrix protein import. Curr Opin Cell Biol 24:1–6

    Article  Google Scholar 

  8. Hasan S, Platta HW, Erdmann R (2013) Import of proteins into the peroxisomal matrix. Front Physiol 4: Article 261

    Google Scholar 

  9. Fujiki Y, Rachubinski RA, Mortensen RM, Lazarow PB (1985) Synthesis of 3-ketoacyl-CoA thiolase of rat liver peroxisomes on free polyribosomes as a larger precursor. Induction of thiolase mRNA activity by clofibrate. Biochem J 226:697–704

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  10. Small GM, Imanaka T, Shio H, Lazarow PB (1987) Efficient association of in vitro translation products with purified stable Candida tropicalis peroxisomes. Mol Cell Biol 7:1848–1855

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  11. Gouveia AM, Guimaraes CP, Oliveira ME, Reguenga C, Sa-Miranda C, Azevedo JE (2003) Characterization of the peroxisomal cycling receptor, Pex5p, using a cell-free in vitro import system. J Biol Chem 278:226–232

    Article  CAS  PubMed  Google Scholar 

  12. Platta HW, Grunau S, Rosenkranz K, Girzalsky W, Erdmann R (2005) Functional role of the AAA peroxins in dislocation of the cycling PTS1 receptor back to the cytosol. Nat Cell Biol 7:817–822

    Article  CAS  PubMed  Google Scholar 

  13. Miyata N, Fujiki Y (2005) Shuttling mechanism of peroxisome targeting signal type 1 receptor Pex5: ATP-independent import and ATP-dependent export. Mol Cell Biol 25:10822–10832

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  14. Imanaka T, Small GM, Lazarow PB (1987) Translocation of acyl-CoA oxidase into peroxisomes requires ATP hydrolysis but not a membrane potential. J Cell Biol 105:2915–2922

    Article  CAS  PubMed  Google Scholar 

  15. Wendland M, Subramani S (1993) Cytosol-dependent peroxisomal protein import in a permeabilized cell system. J Cell Biol 120:675–685

    Article  CAS  PubMed  Google Scholar 

  16. Terlecky SR, Legakis JE, Hueni SE, Subramani S (2001) Quantitative analysis of peroxisomal protein import in vitro. Exp Cell Res 263:98–106

    Article  CAS  PubMed  Google Scholar 

  17. Legakis JE, Terlecky SR (2001) PTS2 protein import into mammalian peroxisomes. Traffic 2:252–260

    Article  CAS  PubMed  Google Scholar 

  18. Liu Y, Yagita Y, Fujiki Y (2016) Assembly of peroxisomal membrane proteins via the direct Pex19p-Pex3p pathway. Traffic 17:433–455

    Article  CAS  PubMed  Google Scholar 

  19. Nashiro C, Kashiwagi A, Matsuzaki T, Tamura S, Fujiki Y (2011) Recruiting mechanism of the AAA peroxins, Pex1p and Pex6p, to Pex26p on peroxisome membrane. Traffic 12:774–788

    Article  CAS  PubMed  Google Scholar 

  20. Fujiki Y, Hubbard AL, Fowler S, Lazarow PB (1982) Isolation of intracellular membranes by means of sodium carbonate treatment: application to endoplasmic reticulum. J Cell Biol 93:97–102

    Article  CAS  PubMed  Google Scholar 

  21. Mukai S, Fujiki Y (2006) Molecular mechanisms of import of peroxisome-targeting signal type 2 (PTS2) proteins by PTS2 receptor Pex7p and PTS1 receptor Pex5pL. J Biol Chem 281:37311–37320

    Article  CAS  PubMed  Google Scholar 

  22. Matsuzono Y, Matsuzaki T, Fujiki Y (2006) Functional domain mapping of peroxin Pex19p: interaction with Pex3p is essential for function and translocation. J Cell Sci 119:3539–3550

    Article  CAS  PubMed  Google Scholar 

  23. Shimizu N, Itoh R, Hirono Y, Otera H, Ghaedi K, Tateishi K, Tamura S, Okumoto K, Harano T, Mukai S, Fujiki Y (1999) The peroxin Pex14p: cDNA cloning by functional complementation on a Chinese hamster ovary cell mutant, characterization, and functional analysis. J Biol Chem 274:12593–12604

    Article  CAS  PubMed  Google Scholar 

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Acknowledgments

This work was supported in part by Grants-in-Aid for Scientific Research (24247038, 25112518, 25116717, 26116007, and 15K14511 to Y.F.; 26440032 to K.O.) from the Ministry of Education, Culture, Sports, Science and Technology of Japan, and grants from the Takeda Science Foundation, the Naito Foundation, and the Japan Foundation for Applied Enzymology.

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Correspondence to Yukio Fujiki .

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Okumoto, K., Honsho, M., Liu, Y., Fujiki, Y. (2017). Peroxisomal Membrane and Matrix Protein Import Using a Semi-Intact Mammalian Cell System. In: Schrader, M. (eds) Peroxisomes. Methods in Molecular Biology, vol 1595. Humana Press, New York, NY. https://doi.org/10.1007/978-1-4939-6937-1_20

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  • DOI: https://doi.org/10.1007/978-1-4939-6937-1_20

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  • Publisher Name: Humana Press, New York, NY

  • Print ISBN: 978-1-4939-6935-7

  • Online ISBN: 978-1-4939-6937-1

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