Skip to main content

Quantifying CBM Carbohydrate Interactions Using Microscale Thermophoresis

  • Protocol
  • First Online:
Protein-Carbohydrate Interactions

Part of the book series: Methods in Molecular Biology ((MIMB,volume 1588))

Abstract

MicroScale Thermophoresis (MST) is an emerging technology for studying a broad range of biomolecular interactions with high sensitivity. The affinity constant can be obtained for a wide range of molecules within minutes based on reactions in microliters. Here, we describe the application of MST in quantifying two CBM-carbohydrate interactions, a CBM3a toward cellulose nanocrystals and a CBM4 against xylohexaose.

This is a preview of subscription content, log in via an institution to check access.

Access this chapter

Protocol
USD 49.95
Price excludes VAT (USA)
  • Available as PDF
  • Read on any device
  • Instant download
  • Own it forever
eBook
USD 119.00
Price excludes VAT (USA)
  • Available as EPUB and PDF
  • Read on any device
  • Instant download
  • Own it forever
Softcover Book
USD 159.99
Price excludes VAT (USA)
  • Compact, lightweight edition
  • Dispatched in 3 to 5 business days
  • Free shipping worldwide - see info
Hardcover Book
USD 169.99
Price excludes VAT (USA)
  • Durable hardcover edition
  • Dispatched in 3 to 5 business days
  • Free shipping worldwide - see info

Tax calculation will be finalised at checkout

Purchases are for personal use only

Institutional subscriptions

References

  1. Abbott DW, Boraston AB (2012) Quantitative approaches to the analysis of carbohydrate-binding module function. Methods Enzymol 510:211–231. doi:10.1016/B978-0-12-415931-0.00011-2

    Article  CAS  PubMed  Google Scholar 

  2. Duhr S, Braun D (2006) Thermophoretic depletion follows boltzmann distribution. Phys Rev Lett 96:1–4. doi:10.1103/PhysRevLett.96.168301

    Article  Google Scholar 

  3. Duhr S, Braun D (2006) Why molecules move along a temperature gradient. Proc Natl Acad Sci U S A 103:19678–19682. doi:10.1073/pnas.0603873103

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  4. Jerabek-Willemsen M, André T, Wanner R et al (2014) MicroScale thermophoresis: interaction analysis and beyond. J Mol Struct 1077:101–113. doi:10.1016/j.molstruc.2014.03.009

    Article  CAS  Google Scholar 

  5. Baaske P, Wienken CJ, Reineck P et al (2010) Optical thermophoresis for quantifying the buffer dependence of aptamer binding. Angew Chem Int Ed Engl 49:2238–2241. doi:10.1002/anie.200903998

    Article  CAS  PubMed  Google Scholar 

  6. Tormo J, Lamed R, Chirino AJ et al (1996) Crystal structure of a bacterial family-III cellulose-binding domain: a general mechanism for attachment to cellulose. EMBO J 15:5739–5751

    CAS  PubMed  PubMed Central  Google Scholar 

  7. Bastien GG, Arnal GG, Bozonnet S et al (2013) Mining for hemicellulases in the fungus-growing termite Pseudacanthotermes militaris using functional metagenomics. Biotechnol Biofuels 6:78. doi:10.1186/1754-6834-6-78

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  8. Martinez T, Texier H, Nahoum V et al (2015) Probing the functions of carbohydrate binding modules in the cbel protein from the oomycete phytophthora parasitica. PLoS One 10:1–14. doi:10.1371/journal.pone.0137481

    CAS  Google Scholar 

  9. Blake AW, Mccartney L, Flint JE et al (2006) Understanding the biological rationale for the diversity of cellulose-directed carbohydrate-binding modules in prokaryotic enzymes. J Biol Chem 281:29321–29329. doi:10.1074/jbc.M605903200

    Article  CAS  PubMed  Google Scholar 

  10. Gasteiger E, Hoogland C, Gattiker A et al (2005) Protein identification and analysis tools on the ExPASy Server. In: Proteomics protocols handbook. Humana Press, Totowa, NJ, pp 571–607

    Chapter  Google Scholar 

Download references

Acknowledgment

We acknowledge the Fédération de Recherche Agrobiosciences, Interactions et Biodiversité (FR 3450), CNRS, Université de Toulouse, UPS, Castanet-Tolosan, France, and the IDEX “UNITI” Université de Toulouse (GO-AHEAD project) for the Nanotemper Monolith NT.115 facilities.

Author information

Authors and Affiliations

Authors

Corresponding author

Correspondence to Claire Dumon .

Editor information

Editors and Affiliations

Rights and permissions

Reprints and permissions

Copyright information

© 2017 Springer Science+Business Media LLC

About this protocol

Cite this protocol

Wu, H., Montanier, C.Y., Dumon, C. (2017). Quantifying CBM Carbohydrate Interactions Using Microscale Thermophoresis. In: Abbott, D., Lammerts van Bueren, A. (eds) Protein-Carbohydrate Interactions. Methods in Molecular Biology, vol 1588. Humana Press, New York, NY. https://doi.org/10.1007/978-1-4939-6899-2_10

Download citation

  • DOI: https://doi.org/10.1007/978-1-4939-6899-2_10

  • Published:

  • Publisher Name: Humana Press, New York, NY

  • Print ISBN: 978-1-4939-6898-5

  • Online ISBN: 978-1-4939-6899-2

  • eBook Packages: Springer Protocols

Publish with us

Policies and ethics