Abstract
Protein microarrays are emerging tools which have become very powerful in multiplexed detection technologies. A variety of proteins can be immobilized on a sensor chip allowing for multiplexed diagnostics. Therefore, various types of analyte in a small volume of sample can be detected simultaneously. Protein immobilization is a crucial step for creating a robust and sensitive protein microarray-based detection system. In order to achieve a successful protein immobilization and preserve the activity of the proteins after immobilization, DNA-directed immobilization is a promising technique. Here, we present the design and the use of DNA-directed immobilized (DDI) antibodies in fabrication of robust protein microarrays. We focus on application of protein microarrays for capturing and detecting nanoparticles such as intact viruses. Experimental results on Single-particle interferometric reflectance imaging sensor (SP-IRIS) are used to validate the advantages of the DDI method.
*These authors contributed equally to this work.
Access this chapter
Tax calculation will be finalised at checkout
Purchases are for personal use only
References
MacBeath G, Schreiber SL (2000) Printing proteins as microarrays for high-throughput function determination. Science 289:1760–1763
Sun H, Chen GYJ, Yao SQ (2013) Recent advances in microarray technologies for proteomics. Chem Biol 20:685–699
Hall DA, Tacek J, Snyder M (2007) Protein microarray technology. Mech Ageing Dev 128(1):161–167
Avci O, Lortlar ÜN, Yalcin A et al (2015) Interferometric Reflectance imaging sensor (IRIS)-a platform technology for multiplexed diagnostics and digital detection. Sensors 15(7):17649–17665
Schwenk JM, Lindberg J, Sundberg M et al (2007) Determination of binding specificities in highly multiplexed bead-based antibody assays for antibody proteomics. Mol Cell Proteomics 6:125–132
Cretich M, Daaboul GG, Sola L et al (2015) Digital detection of biomarkers assisted by nanoparticles: application to diagnostics. Trends Biotechnol 33(6):343–351
Yurt A, Daaboul GG, Connor JH et al (2012) Single nanoparticle detectors for biological applications. Nanoscale 4(3):715–726
Walt D (2013) Optical methods for single molecule detection and analysis. Anal Chem 85(3):1258–1263
Daaboul GG, Lopez CA, Chinnala J et al (2014) Digital sensing and sizing of vesicular stomatitis virus pseudotypes in complex media: a model for ebola and marburg detection. ACS Nano 8(6):6047–6055
Monroe MR, Daaboul GG, Tuysuzoglu A et al (2013) Single nanoparticle detection for multiplexed protein diagnostics with attomolar sensitivity in serum and unprocessed whole blood. Anal Chem 85(7):3698–3706
Sevenler D, Lortlar ÜN, Ünlü MS (2015) Nanoparticle biosensing with interferometric reflectance imaging. In: Vestergaard MC, Kerman K, Hsing I-M, Tamiya E (eds) Nanobiosensors and nanobioanalyses. Springer, Tokyo, pp 81–95
Monroe MR, Reddington A, Collins AD et al (2011) Multiplexed method to calibrate and quantitate fluorescence signal for allergen-specific IgE. Anal Chem 83(24):9485–9491
Niemeyer CM, Boldt L, Ceyhan B et al (1999) DNA-directed immobilization: efficient, reversible, and site-selective surface binding of proteins by means of covalent DNA-streptavidin conjugates. Anal Biochem 268:54–63
Ladd J, Boozer C, Yu Q et al (2004) DNA-directed protein immobilization on mixed self-assembled monolayers via a streptavidin bridge. Langmuir 20:8090–8095
Schroeder H, Adler M, Gergk K et al (2009) User configurable microfluidic device for multiplexed immunoassays based on DNA-directed assembly. Anal Chem 81:1275–1279
Washburn AL, Gomez J, Bailey RC (2011) DNA-encoding to improve performance and allow parallel evaluation of the binding characteristics of multiple antibodies in a surface-bound immunoassay format. Anal Chem 83:3572–3580
Wacker R, Niemeyer CM (2004) DNA- μFIA-a readily configurable microarray-fluorescence immunoassay based on DNA-directed immobilization of proteins. Chem Bio Chem 5:453–459
Wacker R, Schroder H, Niemeyer CM (2004) Performance of antibody microarrays fabricated by either DNA-directed immobilization, direct spotting, or streptavidin-biotin attachment: a comparative study. Anal Biochem 330:281–287
Seymour E, Daaboul GG, Zhang X et al (2015) DNA-directed antibody immobilization for enhanced detection of single viral pathogens. Anal Chem 87(20):10505–10512
Avci O, Adato R, Yalcin OA et al (2016) Physical modeling of interference enhanced imaging and characterization of single nanoparticles. Opt Express 24(6):6094–6114
Pirri G, Damin F, Chiari M et al (2004) Characterization of the polymeric adsorbed coating for DNA microarray glass slides. Anal Chem 76(4):1352–1358
Yalçin A, Damin F, Özkumur E et al (2009) Direct observation of conformation of a polymeric coating with implications in microarray applications. Anal Chem 81(2):625–630
Romanov V, Davido SN, Miles AR et al (2014) A critical comparison of protein microarray fabrication technologies. Analyst 139(6):1303–1326
Author information
Authors and Affiliations
Corresponding author
Editor information
Editors and Affiliations
Rights and permissions
Copyright information
© 2017 Springer Science+Business Media LLC
About this protocol
Cite this protocol
Ünlü, N.L., Kanik, F.E., Seymour, E., Connor, J.H., Ünlü, M.S. (2017). DNA-Directed Antibody Immobilization for Robust Protein Microarrays: Application to Single Particle Detection ‘DNA-Directed Antibody Immobilization. In: Rasooly, A., Prickril, B. (eds) Biosensors and Biodetection. Methods in Molecular Biology, vol 1571. Humana Press, New York, NY. https://doi.org/10.1007/978-1-4939-6848-0_12
Download citation
DOI: https://doi.org/10.1007/978-1-4939-6848-0_12
Published:
Publisher Name: Humana Press, New York, NY
Print ISBN: 978-1-4939-6846-6
Online ISBN: 978-1-4939-6848-0
eBook Packages: Springer Protocols