Skip to main content

Multicolor Karyotyping and Fluorescence In Situ Hybridization-Banding (MCB/mBAND)

  • Protocol
  • First Online:
Cancer Cytogenetics

Part of the book series: Methods in Molecular Biology ((MIMB,volume 1541))

Abstract

Multicolor fluorescence in situ hybridization (mFISH) approaches are routine applications in tumor as well as clinical cytogenetics nowadays. The first approach when thinking about mFISH is multicolor karyotyping using human whole chromosome paints as probes; this can be achieved by narrow-band filter-based multiplex-FISH (M-FISH) or interferometer/spectroscopy-based spectral karyotyping (SKY). Besides, various FISH-based banding approaches were reported in the literature, including multicolor banding (MCB/mBAND) the latter being evaluated by narrow-band filters, and using specific software. Here, we describe the combined application of multicolor karyotyping and MCB/mBAND for the characterization of simple and complex acquired chromosomal changes in cancer cytogenetics.

This is a preview of subscription content, log in via an institution to check access.

Access this chapter

Protocol
USD 49.95
Price excludes VAT (USA)
  • Available as PDF
  • Read on any device
  • Instant download
  • Own it forever
eBook
USD 79.99
Price excludes VAT (USA)
  • Available as EPUB and PDF
  • Read on any device
  • Instant download
  • Own it forever
Softcover Book
USD 99.99
Price excludes VAT (USA)
  • Compact, lightweight edition
  • Dispatched in 3 to 5 business days
  • Free shipping worldwide - see info
Hardcover Book
USD 129.99
Price excludes VAT (USA)
  • Durable hardcover edition
  • Dispatched in 3 to 5 business days
  • Free shipping worldwide - see info

Tax calculation will be finalised at checkout

Purchases are for personal use only

Institutional subscriptions

References

  1. Othman MA, Melo JB, Carreira IM et al (2015) High rates of submicroscopic aberrations in karyotypically normal acute lymphoblastic leukemia. Mol Cytogenet 8:45

    Article  PubMed  PubMed Central  Google Scholar 

  2. Claussen U, Michel S, Mühlig P et al (2002) Demystifying chromosome preparation and the implications for the concept of chromosome condensation during mitosis. Cytogenet Genome Res 98:136–146

    Article  CAS  PubMed  Google Scholar 

  3. Chang SS, Mark HF (1997) Emerging molecular cytogenetic technologies. Cytobios 90:7–22

    CAS  PubMed  Google Scholar 

  4. Liehr T, Starke H, Weise A et al (2004) Multicolor FISH probe sets and their applications. Histol Histopathol 19:229–237

    CAS  PubMed  Google Scholar 

  5. Nederlof PM, Robinson D, Abuknesha R et al (1989) Three-color fluorescence in situ hybridization for the simultaneous detection of multiple nucleic acid sequences. Cytometry 10:20–27

    Article  CAS  PubMed  Google Scholar 

  6. Speicher MR, Gwyn Ballard S, Ward DC (1996) Karyotyping human chromosomes by combinatorial multi-fluor FISH. Nat Genet 12:368–375

    Article  CAS  PubMed  Google Scholar 

  7. Schröck E, du Manoir S, Veldman T et al (1996) Multicolor spectral karyotyping of human chromosomes. Science 273:494–497

    Article  PubMed  Google Scholar 

  8. Tanke HJ, De Haas RR, Sagner G et al (1998) Use of platinum coproporphyrin and delayed luminescence imaging to extend the number of targets FISH karyotyping. Cytometry 33:453–459

    Article  CAS  PubMed  Google Scholar 

  9. Senger G, Chudoba I, Plesch A (1998) Multicolor-FISH – the identification of chromosome aberrations by 24 colors. BIOforum 9:499–503

    Google Scholar 

  10. Tanke HJ, Wiegant J, van Gijlswijk RP et al (1999) New strategy for multi-colour fluorescence in situ hybridisation: COBRA: COmbined Binary RAtio labelling. Eur J Hum Genet 7:2–11

    Article  CAS  PubMed  Google Scholar 

  11. Azofeifa J, Fauth C, Kraus J et al (2000) An optimized probe set for the detection of small interchromosomal aberrations by use of 24-color FISH. Am J Hum Genet 66:1684–1688

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  12. Aurich-Costa J, Vannier A, Gregoire E et al (2001) IPM-FISH, a new M-FISH approach using IRS-PCR painting probes: application to the analysis of seven human prostate cell lines. Genes Chromosomes Cancer 30:143–160

    Article  CAS  PubMed  Google Scholar 

  13. Liehr T (2016) Basics and literature on multicolor fluorescence in situ hybridization application. http://fish-tl.com/mfish.html. Accessed 15 September 2016

  14. Liehr T, Heller A, Starke H et al (2002) FISH banding methods: applications in research and diagnostics. Expert Rev Mol Diagn 2:217–225

    Article  CAS  PubMed  Google Scholar 

  15. Müller S, O’Brien PC, Ferguson-Smith MA et al (1998) Cross-species colour segmenting: a novel tool in human karyotype analysis. Cytometry 33:445–452

    Article  PubMed  Google Scholar 

  16. Lichter P, Tang CJ, Call K et al (1990) High-resolution mapping of human chromosome 11 by in situ hybridization with cosmid clones. Science 247:64–69

    Article  CAS  PubMed  Google Scholar 

  17. Lengauer C, Green ED, Cremer T (1992) Fluorescence in situ hybridization of YAC clones after Alu-PCR amplification. Genomics 13:826–828

    Article  CAS  PubMed  Google Scholar 

  18. Liehr T, Weise A, Heller A et al (2002) Multicolor chromosome banding (MCB) with YAC/BAC-based probes and region-specific microdissection DNA libraries. Cytogenet Genome Res 97:43–50

    Article  CAS  PubMed  Google Scholar 

  19. Hamid AB, Kreskowski K, Weise A et al (2012) How to narrow down chromosomal breakpoints in small and large derivative chromosomes--a new probe set. J Appl Genet 53:259–269

    Article  CAS  PubMed  Google Scholar 

  20. Müller S, Rocchi M, Ferguson-Smith MA et al (1997) Toward a multicolor chromosome bar code for the entire human karyotype by fluorescence in situ hybridization. Hum Genet 100:271–278

    Article  PubMed  Google Scholar 

  21. Chudoba I, Plesch A, Lörch T et al (1999) High resolution multicolorbanding: a new technique for refined FISH analysis of human chromosomes. Cytogenet Cell Genet 84:156–160

    Article  CAS  PubMed  Google Scholar 

  22. Liehr T, Heller A, Starke H et al (2002) Microdissection based high resolution multicolor banding for all 24 human chromosomes. Int J Mol Med 9:335–339

    CAS  PubMed  Google Scholar 

  23. Weise A, Mrasek K, Fickelscher I et al (2008) Molecular definition of high-resolution multicolor banding probes: first within the human DNA sequence anchored FISH banding probe set. J Histochem Cytochem 56:487–493

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  24. Weise A, Heller A, Starke H et al (2003) Multitude multicolor chromosome banding (mMCB)—a comprehensive one-step multicolor FISH banding method. Cytogenet Genome Res 103:34–39

    Article  CAS  PubMed  Google Scholar 

  25. Kakazu N, Ashihara E, Hada S et al (2001) Development of spectral colour banding in cytogenetic analysis. Lancet 357:529–530

    Article  CAS  PubMed  Google Scholar 

  26. Kakazu N, Bar-Am I, Hada S et al (2003) A new chromosome banding technique, spectral color banding (SCAN), for full characterization of chromosomal abnormalities. Genes Chromosomes Cancer 37:412–416

    Article  CAS  PubMed  Google Scholar 

  27. Tjia WM, Sham JS, Hu L et al (2005) Characterization of 3p, 5p, and 3q in two nasopharyngeal carcinoma cell lines, using region-specific multiplex fluorescence in situ hybridization probes. Cancer Genet Cytogenet 158:61–66

    Article  CAS  PubMed  Google Scholar 

Download references

Acknowledgments

Supported in parts by the Wilhelm Sander Stiftung (2013.032.1) and German academic exchange service (DAAD).

Author information

Authors and Affiliations

Authors

Corresponding author

Correspondence to Thomas Liehr .

Editor information

Editors and Affiliations

Rights and permissions

Reprints and permissions

Copyright information

© 2017 Springer Science+Business Media LLC

About this protocol

Cite this protocol

Liehr, T., Othman, M.A.K., Rittscher, K. (2017). Multicolor Karyotyping and Fluorescence In Situ Hybridization-Banding (MCB/mBAND). In: Wan, T. (eds) Cancer Cytogenetics. Methods in Molecular Biology, vol 1541. Humana Press, New York, NY. https://doi.org/10.1007/978-1-4939-6703-2_16

Download citation

  • DOI: https://doi.org/10.1007/978-1-4939-6703-2_16

  • Published:

  • Publisher Name: Humana Press, New York, NY

  • Print ISBN: 978-1-4939-6701-8

  • Online ISBN: 978-1-4939-6703-2

  • eBook Packages: Springer Protocols

Publish with us

Policies and ethics