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Cancer Cytogenetics: An Introduction

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Cancer Cytogenetics

Part of the book series: Methods in Molecular Biology ((MIMB,volume 1541))

Abstract

The Philadelphia chromosome was the first chromosomal abnormality discovered in cancer using the cytogenetics technique in 1960, and was consistently associated with chronic myeloid leukemia. Over the past five decades, innovative technical advances in the field of cancer cytogenetics have greatly enhanced the detection ability of chromosomal alterations, and have facilitated the research and diagnostic potential of chromosomal studies in neoplasms. These developments notwithstanding, chromosome analysis of a single cell is still the easiest way to delineate and understand the relationship between clonal evolution and disease progression of cancer cells. The use of advanced fluorescence in situ hybridization (FISH) techniques allows for the further identification of chromosomal alterations that are unresolved by the karyotyping method. It overcame many of the drawbacks of assessing the genetic alterations in cancer cells by karyotyping. Subsequently, the development of DNA microarray technologies provides a high-resolution view of the whole genome, which may add massive amounts of new information and opens the field of cancer cytogenomics. Strikingly, cancer cytogenetics does not only provide key information to improve the care of patients with malignancies, but also acts as a guide to identify the genes responsible for the development of these neoplastic states and has led to the emergence of molecularly targeted therapies in the field of personalized medicine.

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References

  1. Tjio JH, Levan A (1956) The chromosome number in man. Hereditas 42:1–6

    Article  Google Scholar 

  2. Nowell PC, Hungerford DA (1960) A minute chromosome in human chronic granulocytic leukemia. Science 132:1497

    Google Scholar 

  3. Rowley JD (1973) A new consistent chromosomal abnormality in chronic myelogeneous leukaemia identified by quinacrine fluorescence and Giemsa staining. Nature 243:290–293

    Article  CAS  PubMed  Google Scholar 

  4. Konopka JB, Watanabe SM, Singer JW et al (1985) Cell lines and clinical isolates derived from Ph’-positive chronic myelogeneous leukemia patients express c-abl proteins with a common structural alteration. Proc Natl Acad Sci U S A 82:1810–1814

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  5. Vardiman JW, Thiele J, Arber DA et al (2009) The 2008 revision of the World Health Organization (WHO) classification of myeloid neoplasm and acute leukemia: rationale and important changes. Blood 114:937–951

    Article  CAS  PubMed  Google Scholar 

  6. Manuelidis L, Langer-Safer PR, Ward DC (1982) High-resolution mapping of satellite DNA using biotin-labeled DNA probes. J Cell Biol 95:619–625

    Article  CAS  PubMed  Google Scholar 

  7. Wan TS, Ma ES (2012) Molecular cytogenetics: an indispensable tool for cancer diagnosis. Chang Gung Med J 35:96–110

    PubMed  Google Scholar 

  8. Wan TS, Ma ES (2012) The role of FISH in hematologic cancer. Int J Hematol Oncol 1:71–86

    Article  CAS  Google Scholar 

  9. Wan TS (2014) Cancer cytogenetics: methodology revisited. Ann Lab Med 34:413–425

    Article  PubMed  PubMed Central  Google Scholar 

  10. Yunis JJ (1982) Comparative analysis of high-resolution chromosome techniques for leukemic bone marrows. Cancer Genet Cytogenet 7:43–50

    Article  CAS  PubMed  Google Scholar 

  11. Garipidou V, Secker-Walker LM (1991) The use of fluorodeoxyuridine synchronization for cytogenetic investigation of acute lymphoblastic leukemia. Cancer Genet Cytogenet 52:107–111

    Article  CAS  PubMed  Google Scholar 

  12. Saxe DF, Persons DL, Wolff DJ, Cytogenetics Resource Committee of the College of American Pathologists et al (2012) Validation of fluorescence in situ hybridization using an analyste-specific reagent for detection of abnormalities involving the mixed lineage leukemia gene. Arch Pathol Lab Med 136:47–52

    Article  PubMed  Google Scholar 

  13. Kallioniemi A, Kallioniemi OP, Sudar D et al (1992) Compararive genomic hybridization for molecular cytogenetic analysis of solid tumors. Science 258:818–821

    Article  CAS  PubMed  Google Scholar 

  14. Pinkel D, Segraves R, Sudar D et al (1998) High resolution analysis of DNA copy number variation using comparative genomic hybridization to microarrays. Nat Genet 20:207–211

    Article  CAS  PubMed  Google Scholar 

  15. Schröck E, du Manoir S, Veldman T et al (1996) Multicolor spectral karyotyping of human chromosomes. Science 273:494–497

    Article  PubMed  Google Scholar 

  16. Speicher MR, Gwyn Ballard S, Ward DC (1996) Karyotyping human chromosomes by combinatorial multi-fluor FISH. Nat Genet 12:368–375

    Article  CAS  PubMed  Google Scholar 

  17. Chudoba I, Plesch A, Lörch T et al (1999) High resolution multicolor-banding: a new technique for refine FISH analysis of human chromosomes. Cytogenet Cell Genet 84:156–160

    Article  CAS  PubMed  Google Scholar 

  18. Tsao SW, Wong N, Wang X et al (2001) Nonrandom chromosomal imbalances in human ovarian surface epithelial cells immortalized by HPV16-E6E7 viral oncogenes. Cancer Genet Cytogenet 130:141–149

    Article  CAS  PubMed  Google Scholar 

  19. Hu YC, Lam KY, Law SY et al (2002) Establishment, characterization, karyotyping, and comparative genomic hybridization analysis of HKESC-2 and HKESC-3, two newly established human esophageal squamous cell carcinoma cell lines. Cancer Genet Cytogenet 135:120–127

    Article  CAS  PubMed  Google Scholar 

  20. Wong MP, Fung LF, Wang E et al (2003) Chromosomal aberrations of primary lung adenocarcinomas in nonsmokers. Cancer 97:1263–1270

    Article  PubMed  Google Scholar 

  21. Wan TS, Martens UM, Poon SS et al (1999) Absence or low number of telomere repeats at junctions of dicentric chromosomes. Genes Chromosomes Cancer 24:83–86

    Article  CAS  PubMed  Google Scholar 

  22. Mitelman F, Johansson B, Mertens F (eds) Mitelman database of chromosome aberrations in cancer. http://cgap.nci.nih.gov/Chromosomes/Mitelman (Updated on May 4, 2016)

  23. Atlas of genetics and cytogenetics in oncology and haematology. http://AtlasGeneticsOncology.org

  24. Shaffer LG, Tommerup N (eds) (2005) ISCN (2005): an international system for human cytogenetic nomenclature. S. Karger, Basel

    Google Scholar 

  25. McGowan-Jordan J, Simons A, Schmid M (eds) (2016) An international system for human cytogenomic nomenclature. S. Karger, Basel. [Reprint of Cytogenet Genome Res 149(1–2)]

    Google Scholar 

  26. Mitelman F, Rowley JD (2007) ISCN (2005) is not acceptable for describing clonal evolution in cancer. Genes Chromosomes Cancer 46:213–214

    Article  PubMed  Google Scholar 

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Acknowledgment

The author thanks Eden Wan for drawing Figs. 1 and 2.

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Correspondence to Thomas S. K. Wan .

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Wan, T.S.K. (2017). Cancer Cytogenetics: An Introduction. In: Wan, T. (eds) Cancer Cytogenetics. Methods in Molecular Biology, vol 1541. Humana Press, New York, NY. https://doi.org/10.1007/978-1-4939-6703-2_1

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  • DOI: https://doi.org/10.1007/978-1-4939-6703-2_1

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  • Publisher Name: Humana Press, New York, NY

  • Print ISBN: 978-1-4939-6701-8

  • Online ISBN: 978-1-4939-6703-2

  • eBook Packages: Springer Protocols

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