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Profiling the Dual Enzymatic Activities of the Serine/Threonine Kinase IRE1α

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Book cover Cancer Gene Networks

Part of the book series: Methods in Molecular Biology ((MIMB,volume 1513))

Abstract

There is an allosteric relationship between the kinase and RNase domains of the ER stress sensor IRE1α. This relationship has been exploited to develop ATP-competitive inhibitors that are able to divergently modulate the RNase activity of IRE1α through its kinase domain. Here, we describe a series of biochemical methods for profiling the dual enzymatic activities of IRE1α. These methods can be used to ascertain how ATP-competitive inhibitors affect the kinase activity of IRE1α and for determining whether these ligands allosterically activate or inactivate RNase activity.

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References

  1. Wang L, Perera BG, Hari SB et al (2012) Divergent allosteric control of the IRE1alpha endoribonuclease using kinase inhibitors. Nat Chem Biol 8:982–989

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  2. Hetz C, Chevet E, Oakes SA (2015) Proteostasis control by the unfolded protein response. Nat Cell Biol 17:829–838

    Article  CAS  PubMed  Google Scholar 

  3. Tirasophon W, Welihinda AA, Kaufman RJ (1998) A stress response pathway from the endoplasmic reticulum to the nucleus requires a novel bifunctional protein kinase/endoribonuclease (Ire1p) in mammalian cells. Genes Dev 12:1812–1824

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  4. Wang XZ, Harding HP, Zhang Y et al (1998) Cloning of mammalian Ire1 reveals diversity in the ER stress responses. EMBO J 17:5708–5717

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  5. Ali MM, Bagratuni T, Davenport EL et al (2011) Structure of the Ire1 autophosphorylation complex and implications for the unfolded protein response. EMBO J 30:894–905

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  6. Lee KP, Dey M, Neculai D et al (2008) Structure of the dual enzyme Ire1 reveals the basis for catalysis and regulation in nonconventional RNA splicing. Cell 132:89–100

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  7. Lu Y, Liang FX, Wang X (2014) A synthetic biology approach identifies the mammalian UPR RNA ligase RtcB. Mol Cell 55:758–770

    Article  PubMed  PubMed Central  Google Scholar 

  8. Kosmaczewski SG, Edwards TJ, Han SM et al (2014) The RtcB RNA ligase is an essential component of the metazoan unfolded protein response. EMBO Rep 15:1278–1285

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  9. Han D, Lerner AG, Vande Walle L et al (2009) IRE1alpha kinase activation modes control alternate endoribonuclease outputs to determine divergent cell fates. Cell 138:562–575

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  10. Upton JP, Wang L, Han D et al (2012) IRE1alpha cleaves select microRNAs during ER stress to derepress translation of proapoptotic Caspase-2. Science 338:818–822

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  11. Ghosh R, Wang L, Wang ES et al (2014) Allosteric inhibition of the IRE1alpha RNase preserves cell viability and function during endoplasmic reticulum stress. Cell 158:534–548

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  12. Maly DJ, Papa FR (2014) Druggable sensors of the unfolded protein response. Nat Chem Biol 10:892–901

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  13. Papa FR, Zhang C, Shokat K, Walter P (2003) Bypassing a kinase activity with an ATP-competitive drug. Science 302:1533–1537

    Article  CAS  PubMed  Google Scholar 

  14. Feldman HC, Tong M, Wang L et al. (2016) Structural and Functional Analysis of the Allosteric Inhibition of IRE1α with ATP-Competitive Ligands. ACS Chem Biol 11:2195–2205

    Google Scholar 

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Correspondence to Dustin J. Maly .

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Feldman, H.C., Maly, D.J. (2017). Profiling the Dual Enzymatic Activities of the Serine/Threonine Kinase IRE1α. In: Kasid, U., Clarke, R. (eds) Cancer Gene Networks. Methods in Molecular Biology, vol 1513. Humana Press, New York, NY. https://doi.org/10.1007/978-1-4939-6539-7_17

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  • DOI: https://doi.org/10.1007/978-1-4939-6539-7_17

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  • Publisher Name: Humana Press, New York, NY

  • Print ISBN: 978-1-4939-6537-3

  • Online ISBN: 978-1-4939-6539-7

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