Abstract
Differential protein precipitation is a rapid and economical step in protein purification and is based on exploiting the inherent physicochemical properties of the polypeptide. Precipitation of recombinant proteins, lysed from the host cell, is commonly used to concentrate the protein of choice before further polishing steps with more selective purification columns (e.g., His-Tag, Size Exclusion, etc.). Recombinant proteins can also precipitate naturally as inclusion bodies due to various influences during overexpression in the host cell. Although this phenomenon permits easier initial separation from native proteins, these inclusion bodies must carefully be differentially solubilized so as to reform functional, correctly folded proteins. Here, appropriate bioinformatics tools to aid in understanding a protein’s propensity to aggregate and solubilize are explored as a backdrop for a typical protein extraction, precipitation, and selective resolubilization procedure, based on a recombinantly expressed protein.
Access this chapter
Tax calculation will be finalised at checkout
Purchases are for personal use only
References
O’Fágáin C (1997) Protein stability and its measurement. In: O’Fágáin C (ed) Stabilising protein function. Springer Press, Berlin, pp 69–75
Ramos Y, GarcĂa Y, Llopiz A, Castellanos-Serra L (2008) Selectivity of bacterial proteome fractionation based on differential solubility: a mass spectrometry evaluation. Anal Biochem 377:134–140
Leimgruber RM (2005) Extraction and solubilisation of proteins for proteomic studies. In: Walker JM (ed) The proteomics protocols handbook. Humana, Totowa, NJ, pp 1–18
Habibi N, Hashim SZM, Norouzi A, Samian MR (2014) A review of machine learning methods to predict the solubility of overexpressed recombinant proteins in Escherichia coli. BMC Bioinformatics 15:134
Smialowski P, Doose G, Torkler P, Kaufmann S, Frishman D (2012) PROSO II–a new method for protein solubility prediction. FEBS J 279:2192–2200
Hirose S, Noguchi T (2013) ESPRESSO: a system for estimating protein expression and solubility in protein expression systems. Proteomics 13:1444–1456
Villalobos A, Ness JE, Gustafsson C, Minshull J, Govindarajan S (2006) Gene Designer: a synthetic biology tool for constructing artificial DNA segments. BMC Bioinformatics 7:285
Hays FA, Roe-Zurz Z, Stroud RM (2010) Overexpression and purification of integral membrane proteins in yeast. Methods Enzymol 470:695–707
Zheng H, Miyakawa T, Sawano Y, Yamagoe S, Tanokura M (2013) Expression, high-pressure refolding and purification of human leukocyte cell-derived chemotaxin 2 (LECT2). Protein Expr Purif 88:221–229
Dworeck T, Petri AK, Muhammad N, Fioroni M, Schwaneberg U (2011) FhuA deletion variant Δ1-159 overexpression in inclusion bodies and refolding with Polyethylene-Poly (ethylene glycol) diblock copolymer. Protein Expr Purif 77:75–79
Rane AM, Jonnalagadda S, Li Z (2013) On-column refolding of bone morphogenetic protein-2 using cation exchange resin. Protein Expr Purif 90:135–140
Yamaguchi H, Miyazaki M (2014) Refolding techniques for recovering biologically active recombinant proteins from inclusion bodies. Biomolecules 4:235–251
Pace CN, Grimsley GR, Scholtz JM (2009) Protein ionizable groups: pK values and their contribution to protein stability and solubility. J Biol Chem 284:13285–13289
Trevino SR, Scholtz JM, Pace CN (2008) Measuring and increasing protein solubility. J Pharm Sci 97:4155–4166
Dehouck Y, Kwasigroch JM, Gilis D, Rooman M (2011) PoPMuSiC 2.1: a web server for the estimation of protein stability changes upon mutation and sequence optimality. BMC Bioinformatics 12:151
Jonasson P, Liljeqvist S, Nygren PA, Ståhl S (2002) Genetic design for facilitated production and recovery of recombinant proteins in Escherichia coli. Biotechnol Appl Biochem 35:91–105
Chen ZY, Cao J, Xie L, Li XF, Yu ZH, Tong WY (2014) Construction of leaky strains and extracellular production of exogenous proteins in recombinant Escherichia coli. J Microbial Biotechnol 7:360–370
Yoon SH, Kim SK, Kim JF (2010) Secretory production of recombinant proteins in Escherichia coli. Recent Pat Biotechnol 4:23–29
Jonet MA, Mahadi NM, Murad AMA, Rabu A, Bakar FDA, Rahim RA, Illias RM (2012) Optimization of a heterologous signal peptide by site-directed mutagenesis for improved secretion of recombinant proteins in Escherichia coli. J Mol Microbiol Biotechnol 22:48–58
Fu XY (2010) Extracellular accumulation of recombinant protein by Escherichia coli in a defined medium. Appl Microbiol Biotechnol 88:75–86
Leibly DJ, Nguyen TN, Kao LT, Hewitt SN, Barrett LK, Van Voorhis WC (2012) Stabilizing additives added during cell lysis aid in the solubilization of recombinant proteins. PLoS One 7:e52482
French C, Keshavarz-Moore E, Ward JM (1996) Development of a simple method for the recovery of recombinant proteins from the E. coli periplasm. Enzyme Microb Technol 19:332–338
Caldwell RB, Lattemann CT (2004) Simple and reliable method to precipitate proteins from bacterial culture supernatant. Appl Environ Microbiol 70:610–612
Islam MN, Zhang M, Adhikari B (2014) The inactivation of enzymes by ultrasound: a review of potential mechanisms. Food Rev Int 30:1–21
Özbek B, Ülgen KÖ (2000) The stability of enzymes after sonication. Process Biochem 35:1037–1043
Feliu JX, Cubarsi R, Villaverde A (1998) Optimized release of recombinant proteins by ultrasonication of E. coli cells. Biotechnol Bioeng 58:536–540
Doonan S (2004) Bulk purification by fractional precipitation. In: Cutler P (ed) Protein purification protocols, vol 244, Methods in molecular biology. Humana, Totowa, NJ, pp 117–125
Balasundaram B, Sachdeva S, Bracewell DG (2011) Dual salt precipitation for the recovery of a recombinant protein from Escherichia coli. Biotechnol Prog 27:1306–1314
Burgess RR (2009) Protein precipitation techniques. Methods Enzymol 463:331–342
Hekmat D, Maslak D, von Roman MF, Breitschwerdt P, Ströhle C, Vogt A, Berensmeier S, Weuster-Botz D (2015) Non-chromatographic preparative purification of enhanced green fluorescent protein. J Biotechnol 194:84–90
Hekmat D, Breitschwerdt P, Weuster-Botz D (2015) Purification of proteins from solutions containing residual host cell proteins via preparative crystallization. Biotechnol Lett 37:1791–1801
Rothstein F (1994) Differential precipitation of proteins. In: Harrison RG (ed) Protein purification process engineering. Marcel Dekker, New York, pp 115–116
Lindwall G, Chau M-F, Gardner SR, Kohlstaedt LA (2000) A sparse matrix approach to the solubilisation of overexpressed proteins. Protein Eng 13:67–71
Luche S, Santoni V, Rabilloud T (2003) Evaluation of nonionic and zwitterionic detergents as membrane protein solubilizers in two-dimensional electrophoresis. Proteomics 3:249–253
Cabrita LD, Bottomley SP (2004) Protein expression and refolding–a practical guide to getting the most out of inclusion bodies. Biotechnol Annu Rev 10:31–50
Basu A, Li X, Leong SSJ (2011) Refolding of proteins from inclusion bodies: rational design and recipes. Appl Microbiol Biotechnol 92:241–251
Phan J, Yamout N, Schmidberger J, Bottomley SP, Buckle AM (2011) Refolding your protein with a little help from REFOLD. Methods Mol Biol 752:45–57
Tsumoto K, Ejima D, Kumagai I, Arakawa T (2003) Practical considerations in refolding proteins from inclusion bodies. Protein Expr Purif 28:1–8
Rudolph R, Lilie H (1996) In vitro folding of inclusion body proteins. FASEB J 10:49–56
Jungbauer A, Kaar W (2007) Current status of technical protein refolding. J Biotechnol 128:587–596
Author information
Authors and Affiliations
Corresponding author
Editor information
Editors and Affiliations
Rights and permissions
Copyright information
© 2017 Springer Science+Business Media New York
About this protocol
Cite this protocol
Ryan, B.J., Kinsella, G.K. (2017). Differential Precipitation and Solubilization of Proteins. In: Walls, D., Loughran, S. (eds) Protein Chromatography. Methods in Molecular Biology, vol 1485. Humana Press, New York, NY. https://doi.org/10.1007/978-1-4939-6412-3_10
Download citation
DOI: https://doi.org/10.1007/978-1-4939-6412-3_10
Published:
Publisher Name: Humana Press, New York, NY
Print ISBN: 978-1-4939-6410-9
Online ISBN: 978-1-4939-6412-3
eBook Packages: Springer Protocols