Abstract
RNAi has now become a valuable research tool for cell-based high-throughput screening. However, traditional RNAi high-throughput methods are based on multi-well plates, relying on expensive instruments and complicated operations. In this chapter, we describe a method termed self-assembled cell microarray (SAMcell), which integrates micro-fabrication, reverse transfection, and RNAi technologies and allows for cell behavior investigations to be performed directly on the cell chip. This method has been successfully employed to perform large-scale functional screening assays to identify gene modulators of cell migration, cell proliferation, and cellular apoptosis.
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References
Fire A, Xu S, Montqomery MK et al (1998) Potent and specific genetic interference by double-stranded RNA in Caenorhabditis elegans. Nature 391:806–811
Crick F (1970) Central dogma of molecular biology. Nature 227:561–563
Ahlquist P (2002) RNA-dependent RNA polymerases, viruses, and RNA silencing. Science 296:1270–1273
Simpson KJ, Selfors LM, Bui J et al (2008) Identification of genes that regulate epithelial cell migration using an siRNA screening approach. Nat Cell Biol 10:1027–1038
Whitehurst AW, Bodemann BO, Cardenas J et al (2007) Synthetic lethal screen identification of chemosensitizer loci in cancer cells. Nature 446:815–819
Matson RS (2005) Applying genomic and proteomic microarray technology in drug discovery. CRC Press, Boca Raton, FL, USA
Zhang H, Hao Y, Yang J et al (2011) Genome-wide functional screening of miR-23b as a pleiotropic modulator suppressing cancer metastasis. Nat Commun 2, e554
Zhang H, Li J, Hou S et al (2014) Engineered TAL Effector modulators for the large-scale gain-of-function screening. Nucleic Acids Res 42, e114
Rong Y, Liu M, Ma L et al (2012) Clathrin and phosphatidylinositol-4,5-bisphosphate regulate autophagic lysosome reformation. Nat Cell Biol 14:924–934
Zhang H, Wu PY, Ma M et al (2013) An integrative approach for the large-scale identification of human genome kinases regulating cancer metastasis. Nanomedicine 9:732–736
Wang Z, Huang H, Zhang H et al (2012) A magnetic bead-integrated chip for the large scale manufacture of normalized esiRNAs. PLoS One 7, e39419
Xi J, Schmidt JJ, Montemagno CD et al (2005) Self-assembled microdevices driven by muscle. Nat Mater 4:180–184
Acknowledgement
We thank Suzhou Genoarray Biotech Co. Ltd. (Suzhou, China) for contributing to industrialization of SAMcell technology. This work was supported by projects of NSFC (Grant No. 81030040), MOST (Grant No. 2008ZX09401-002, 2011CB809106), and NSFC (20733001, 30600142) and Coulter Foundation Seed Grant.
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Zhang, H., Li, J. (2016). Self-Assembled Cell Microarray (SAMcell) for High-Throughput RNAi Screening. In: Azorsa, D., Arora, S. (eds) High-Throughput RNAi Screening. Methods in Molecular Biology, vol 1470. Humana Press, New York, NY. https://doi.org/10.1007/978-1-4939-6337-9_8
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DOI: https://doi.org/10.1007/978-1-4939-6337-9_8
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Publisher Name: Humana Press, New York, NY
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Online ISBN: 978-1-4939-6337-9
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