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In Vivo Radiolabeling of Arabidopsis Chloroplast Proteins and Separation of Thylakoid Membrane Complexes by Blue Native PAGE

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Plant Proteostasis

Part of the book series: Methods in Molecular Biology ((MIMB,volume 1450))

Abstract

The investigation of membrane protein complex assembly and degradation is essential to understand cellular protein dynamics. Blue native PAGE provides a powerful tool to analyze the composition and formation of protein complexes. Combined with in vivo radiolabeling, the synthesis and decay of protein complexes can be monitored on a timescale ranging from minutes to several hours. Here, we describe a protocol to analyze thylakoid membrane complexes starting either with 35S-methionine labeling of intact Arabidopsis leaves to investigate protein complex dynamics or with unlabeled leaf material to monitor steady-state complex composition.

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References

  1. Nevo R, Charuvi D, Tsabari O, Reich Z (2012) Composition, architecture and dynamics of the photosynthetic apparatus in higher plants. Plant J 70(1):157–176. doi:10.1111/j.1365-313X.2011.04876.x

    Article  CAS  PubMed  Google Scholar 

  2. Granvogl B, Reisinger V, Eichacker LA (2006) Mapping the proteome of thylakoid membranes by de novo sequencing of intermembrane peptide domains. Proteomics 6(12):3681–3695. doi:10.1002/pmic.200500924

    Article  CAS  PubMed  Google Scholar 

  3. Meurer J, Plucken H, Kowallik KV, Westhoff P (1998) A nuclear-encoded protein of prokaryotic origin is essential for the stability of photosystem II in Arabidopsis thaliana. EMBO J 17(18):5286–5297

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  4. Rokka A, Suorsa M, Saleem A, Battchikova N, Aro EM (2005) Synthesis and assembly of thylakoid protein complexes: multiple assembly steps of photosystem II. Biochem J 388(Pt 1):159–168. doi:10.1042/BJ20042098, BJ20042098 [pii]

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  5. Aro EM, Suorsa M, Rokka A, Allahverdiyeva Y, Paakkarinen V, Saleem A, Battchikova N, Rintamaki E (2005) Dynamics of photosystem II: a proteomic approach to thylakoid protein complexes. J Exp Bot 56(411):347–356. doi:10.1093/jxb/eri041, eri041 [pii]

    Article  CAS  PubMed  Google Scholar 

  6. Ploscher M, Reisinger V, Eichacker LA (2011) Proteomic comparison of etioplast and chloroplast protein complexes. J Proteomics 74(8):1256–1265. doi:10.1016/j.jprot.2011.03.020, S1874-3919(11)00111-4 [pii]

    Article  PubMed  Google Scholar 

  7. Armbruster U, Zuhlke J, Rengstl B, Kreller R, Makarenko E, Ruhle T, Schunemann D, Jahns P, Weisshaar B, Nickelsen J, Leister D (2010) The Arabidopsis thylakoid protein PAM68 is required for efficient D1 biogenesis and photosystem II assembly. Plant Cell 22(10):3439–3460. doi:10.1105/tpc.110.077453, tpc.110.077453 [pii]

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  8. Schwenkert S, Legen J, Takami T, Shikanai T, Herrmann RG, Meurer J (2007) Role of the low-molecular-weight subunits PetL, PetG, and PetN in assembly, stability, and dimerization of the cytochrome b6f complex in tobacco. Plant Physiol 144(4):1924–1935. doi:10.1104/pp.107.100131, pp.107.100131 [pii]

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  9. Blum H, Beier H, Gross HJ (1987) Improved silver staining of plant proteins, RNA and DNA in polyacrylamide gels. Electrophoresis 8:93

    Article  CAS  Google Scholar 

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Acknowledgements

Financial support from the German Research Council (DFG, SFB1035, project A4, to SS) is acknowledged. We would further like to thank Manuela Urbischek for providing figures as well as Peter Hagl for critical reading of the manuscript.

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Correspondence to Serena Schwenkert .

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Nickel, C., Brylok, T., Schwenkert, S. (2016). In Vivo Radiolabeling of Arabidopsis Chloroplast Proteins and Separation of Thylakoid Membrane Complexes by Blue Native PAGE. In: Lois, L., Matthiesen, R. (eds) Plant Proteostasis. Methods in Molecular Biology, vol 1450. Humana Press, New York, NY. https://doi.org/10.1007/978-1-4939-3759-2_19

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  • DOI: https://doi.org/10.1007/978-1-4939-3759-2_19

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  • Publisher Name: Humana Press, New York, NY

  • Print ISBN: 978-1-4939-3757-8

  • Online ISBN: 978-1-4939-3759-2

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