Abstract
Tyramide signal amplification (TSA) fluorescence in situ hybridization (FISH) has been shown as a valuable molecular tool for visualizing specific amplified DNA sequences in chromosome preparations. This chapter describes how to perform TSA-FISH, paying special interest to its two critical steps: probe generation and metaphase plate generation. The potential of physically mapping 12S-globulin sequences by TSA-FISH as a means of identifying homeology among chromosome regions of Avena species was tested and is discussed.
Access this chapter
Tax calculation will be finalised at checkout
Purchases are for personal use only
References
Leich AR, Schwarzacher T, Jackson D, Leitch IJ (1994) In situ hybridization. BIOS Scientific Publishers Limited, Oxford
Bobrow MN, Litt GJ, Shaughnessy KJ, Mayer PC, Conlon J (1992) The use of catalysed reported deposition as a means of signal amplification in a variety of formats. J Immunol Methods 150:145–149
Raap AK (1998) Advances in fluorescence in situ hybridization. Mutat Res 400:287–298
Bobrow MN, Harris TD, Shaughnessy KJ, Litt GJ (1989) Catalyzed reported deposition, a novel method of signal amplification. Application to immunoassays. J Immunol Methods 125:279–285
Schriml LM, Padilla-Nash HM, Coleman A, Moen P, Nash WG, Menninger J, Jones G, Ried T, Dean M (1999) Tyramide signal amplification (TSA)-FISH applied to mapping PCR-labeled probes less than 1 kb in size. Biotechniques 27:608–613
Sanz MJ, Loarce N, Ferrer E, Fominaya A (2012) Use of tyramide-fluorescence in situ hybridization and chromosome microdissection for ascertaining homology relationships and chromosome linkage group associations in oats. Cytogenet Genome Res 136:145–156
Thomas H (1992) Cytogenetics of Avena. In: Marshall HG, Sorrells ME (eds) Oat science and technology, vol 33, Agron Monogr. ASA, CSSA, Madison, WI, pp 473–507
Linares C, Ferrer E, Fominaya A (1998) Discrimination of the closely related A and D genomes of the hexaploid oat Avena sativa L. Proc Natl Acad Sci U S A 95:12450–12455
Linares C, González J, Ferrer E, Fominaya A (1996) The use of double fluorescence in situ hybridization to physically map the positions of 5S rDNA genes in relation to the chromosomal location of 18S–5.8S-26S rDNA and a C genome specific DNA sequence in the genus Avena. Genome 39:535–542
Jellen EN, Beard J (2000) Geographical distribution of a chromosome 7C and 17 intergenomic translocation in cultivated oat. Crop Sci 400:256–263
Sanz MJ, Jellen EN, Loarce L, Irigoyen ML, Ferrer E, Fominaya A (2010) A new chromosome nomenclature system for oat (Avena sativa L. and A. byzantina C. Koch) based on FISH analysis of monosomic lines. Theor Appl Genet 121:1541–1552
Acknowledgments
We thank the Ministerio de Ciencia e Innovación of Spain (AGL210-17042) and Universidad de Alcalá (UAH GC2014-002 and UAH CCG2014/EXP-068) for its support of this work.
Author information
Authors and Affiliations
Corresponding author
Editor information
Editors and Affiliations
Rights and permissions
Copyright information
© 2016 Springer Science+Business Media New York
About this protocol
Cite this protocol
Fominaya, A., Loarce, Y., González, J.M., Ferrer, E. (2016). Tyramide Signal Amplification: Fluorescence In Situ Hybridization for Identifying Homoeologous Chromosomes. In: Kianian, S., Kianian, P. (eds) Plant Cytogenetics. Methods in Molecular Biology, vol 1429. Humana Press, New York, NY. https://doi.org/10.1007/978-1-4939-3622-9_4
Download citation
DOI: https://doi.org/10.1007/978-1-4939-3622-9_4
Published:
Publisher Name: Humana Press, New York, NY
Print ISBN: 978-1-4939-3620-5
Online ISBN: 978-1-4939-3622-9
eBook Packages: Springer Protocols