Abstract
Chromosome microdissection followed by microcloning is an efficient tool combining cytogenetics and molecular genetics that can be used for the construction of the high density molecular marker linkage map and fine physical map, the generation of probes for chromosome painting, and the localization and cloning of important genes. Here, we describe a modified technique to microdissect a single chromosome, paint individual chromosomes, and construct single-chromosome DNA libraries.
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Scalenghe F, Turco E, Edström JE, Pirrotta V, Melli M (1981) Microdissection and cloning of DNA from a specific region of Drosophila melanogaster polytene chromosomes. Chromosoma 82:205–216
Jiang CZ, Song WQ, Li XL, Chen RY (1998) Studies on microdissection and microcloning of the rye chromosome 1R. Acta Bot Sin 40:988–993
Seifertova E, Zimmerman LB, Gilchrist MJ, Macha J, Kubickova S, Cernohorska H, Zarsky V, Owens NDL, Sesay AK, Tlapakova T, Krylov V (2013) Efficient high-throughput sequencing of a laser microdissected chromosome arm. BMC Genomics 14:357
Thalhammer S, Langer S, Speicher MR, Heckl WM, Geigl JB (2004) Generation of chromosome painting probes from single chromosomes by laser microdissection and linker-adaptor PCR. Chromosome Res 12:337–343
Nie WH, Wang JH, Su WT, Wang YX, Yang FT (2009) Chromosomal rearrangements underlying karyotype differences between Chinese pangolin (Manis pentadactyla) and Malayan pangolin (Manis javanica) revealed by chromosome painting. Chromosome Res 17:321–329
Nie W, Wang J, Su W, Wang D, Tanomtong A, Perelman PL, Graphodatsky AS, Yang F (2012) Chromosomal rearrangements and karyotype evolution in carnivores revealed by chromosome painting. Heredity 108:17–27
Pauciullo A, Nicodemo D, Cosenza G, Peretti V, Iannuzzi A, Di Meo GP, Ramunno L, Iannuzzi L, Rubes J, Di Berardino D (2012) Similar rates of chromosomal aberrant secondary oocytes in two indigenous cattle (Bostaurus) breeds as determined by dual-color FISH. Theriogenology 77:675–683
Deng CL, Bai LL, Fu SL, Yin WB, Zhang YX, Chen YH, Wang RRC, Zhang XQ, Han FP, Hu ZM (2013) Microdissection and chromosome painting of the alien chromosome in an addition line of wheat - Thinopyrum intermedium. PLoS One 8:e72564
Deng CL, Bai LL, Li SF, Zhang YX, Li X, Chen YH, Wang RRC, Han FP, Hu ZM (2014) DOP-PCR based painting of rye chromosomes in a wheat background. Genome 57:473–479
Zhou RN, Hu ZM (2007) The development of chromosome microdissection and microcloning technique and its applications in genomic research. Curr Genomics 8:67–72
Zhou RN, Shi R, Jiang SM, Yin WB, Wang HH, Chen YH, Hu J, Wang RRC, Zhang XQ, Hu ZM (2008) Rapid EST isolation from chromosome 1R of rye. BMC Plant Biol 8:28
Jiang SM, Yin WB, Hu J, Shi R, Zhou RN, Chen YH, Zhou GH, Wang RRC, Song LY, Hu ZM (2009) Isolation of expressed sequences from a specific chromosome of Thinopyrum intermedium infected by BYDV. Genome 52:68–76
Han FP, Gao Z, Birchler JA (2009) Reactivation of an inactive centromere reveals epigenetic and structural components for centromere specification in maize. Plant Cell 21:1929–1939
Acknowledgments
This work was supported by the National Natural Science Foundation of China (31170209) and the Ministry of Science and Technology of China (2011AA100101). We thank Dr. Fangpu Han for kindly providing repetitive sequence pSc119.2 and the technique advice on FISH .
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Zhang, YX., Deng, CL., Hu, ZM. (2016). The Chromosome Microdissection and Microcloning Technique. In: Kianian, S., Kianian, P. (eds) Plant Cytogenetics. Methods in Molecular Biology, vol 1429. Humana Press, New York, NY. https://doi.org/10.1007/978-1-4939-3622-9_12
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DOI: https://doi.org/10.1007/978-1-4939-3622-9_12
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Publisher Name: Humana Press, New York, NY
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Online ISBN: 978-1-4939-3622-9
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