Abstract
Yeast two-hybrid (Y2H) assay is one of the earliest methods developed to study protein–protein interactions. In the proteomics era, Y2H has created a niche of its own by providing protein interaction maps for various organisms. Owing to limited coding capacities of their genomes, viruses are dependent on their host cellular machinery for successful infection. Identification of the key players orchestrating the survival of virus in their host is essential for understanding viral life cycle and devising strategies to prevent interactions resulting in pathogenesis. In this chapter, Y2H assay will be explained in detail for studying viral–host protein interactions of Chikungunya virus (CHIKV).
Access this chapter
Tax calculation will be finalised at checkout
Purchases are for personal use only
References
Fields S, Song O (1989) A novel genetic system to detect protein–protein interactions. Nature 340:245–246
Brent R, Finley R (1997) Understanding gene and allele function with two-hybrid methods. Annu Rev Genet 31:663–704
Rozen R, Sathish N, Li Y et al (2008) Virion wide protein interactions of Kaposi’s Sarcoma associated Herpesvirus. J Virol 82(10):4742–4750
Calderwood MA, Venkatesan K, Xing L et al (2007) Epstein-Barr virus and virus human protein interaction maps. Proc Natl Acad Sci U S A 104:7606–7611
von Brunn A, Teepe C, Simpson JC et al (2007) Analysis of intraviral protein–protein interactions of the SARS coronavirus ORFeome. PLoS One 2:e459
Chen M, Cortay JC, Gerlier D (2003) Measles virus protein interactions in yeast: new findings and caveats. Virus Res 98:123–129
Mccraith S, Holtzman T, Moss B et al (2000) Genome wide analysis of Vaccinia virus protein–protein interactions. Proc Natl Acad Sci U S A 97:4879–4884
Zhang L, Villa NY, Rahman MM et al (2009) Analysis of vaccinia virus–host protein–protein interactions: validations of yeast two-hybrid screenings. J Proteome Res 8(9):4311–4318
Kumar K, Rana J, Sreejith R et al (2012) Intraviral protein interactions of Chandipura virus. Arch Virol 157:1949–1957
Uetz P, Dong YA, Zeretzke C et al (2005) Herpesviral protein networks and their interaction with the human proteome. Science 311:239–242
Vliet KV, Mohamed MR, Zhang L et al (2009) Poxvirus proteomics and virus–host protein interactions. Microbiol Mol Biol Rev 73(4):730–749
Mairiang D, Zhang H, Sodja A et al (2013) Identification of new protein interactions between dengue fever virus and its hosts, human and mosquito. PLoS One 8(1), e53535
Geng Y, Yang J, Huang W et al (2013) Virus host protein interaction network analysis reveals that the HEV ORF3 protein may interrupt the blood coagulation process. PLoS One 8(2):e56320
Dolan PT, Zhang C, Khadka S et al (2013) Identification and comparative analysis of Hepatitis C virus–host cell protein interactions. Mol Biosyst 9:3199–3209
de Chassey B, Aublin-gex A, Ruggieri A et al (2013) The interactomes of Influenza virus NS1 and NS2 proteins identify new host factors and provide insights for ADAR1 playing a supportive role in virus replication. PLoS Pathog 9(7):e1003440
Sreejith R, Rana J, Dudha N et al (2012) Mapping of interactions among Chikungunya virus nonstructural proteins. Virus Res 169(1):231–236
Dudha N, Rana J, Rajasekharan S et al (2015) Host–pathogen interactome analysis of Chikungunya virus envelope proteins E1 and E2. Virus Genes 50(2):200–209
Author information
Authors and Affiliations
Corresponding author
Editor information
Editors and Affiliations
Rights and permissions
Copyright information
© 2016 Springer Science+Business Media New York
About this protocol
Cite this protocol
Dudha, N., Gupta, S. (2016). Viral–Host Protein Interaction Studies Using Yeast Two-Hybrid Screening Method. In: Chu, J., Ang, S. (eds) Chikungunya Virus. Methods in Molecular Biology, vol 1426. Humana Press, New York, NY. https://doi.org/10.1007/978-1-4939-3618-2_15
Download citation
DOI: https://doi.org/10.1007/978-1-4939-3618-2_15
Published:
Publisher Name: Humana Press, New York, NY
Print ISBN: 978-1-4939-3616-8
Online ISBN: 978-1-4939-3618-2
eBook Packages: Springer Protocols