Abstract
In this chapter, we describe simple methods to investigate microRNA (miRNA) induction in response to lipopolysaccharide, the ligand for Toll-Like Receptor-4 activation. In brief, we demonstrate how to investigate global miRNA induction and/or repression in bone marrow-derived macrophages using TaqMan MicroRNA Arrays, followed by methods to measure individual miRNAs and target mRNA expression. Moreover, we explain step-by-step instructions on how to modulate endogenous miRNA expression through the use of miRNA inhibitors and mimics as well as highlight how miRNA modulation can be used to confirm mRNA targeting via Luciferase reporter assay. Moreover, these methods can be applied to whichever cell type and cellular function under investigation.
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References
Liew FY, Xu D, Brint EK, O’Neill LA (2005) Negative regulation of toll-like receptor-mediated immune responses. Nat Rev Immunol 5:446–458
Cook DN, Pisetsky DS, Schwartz DA (2004) Toll-like receptors in the pathogenesis of human disease. Nat Immunol 5:975–979
McCoy CE (2012) Alternative regulatory mechanisms of TLR signalling: nucleic acid sensors and antiviral immunity. In: Sambhara S, Fujita T (eds) Nucleic acid sensors and antiviral immunity. Landes Bioscience, Austin, TX, pp 58–65
Guo H, Ingolia NT, Weissman JS, Bartel DP (2010) Mammalian microRNAs predominantly act to decrease target mRNA levels. Nature 466:835–840
Grimson A, Farh KK, Johnston WK, Garrett-Engele P, Lim LP et al (2007) MicroRNA targeting specificity in mammals: determinants beyond seed pairing. Mol Cell 27:91–105
O’Neill LA, Sheedy FJ, McCoy CE (2011) MicroRNAs: the fine-tuners of Toll-like receptor signalling. Nat Rev Immunol 11:163–175
Rodriguez A, Vigorito E, Clare S, Warren MV, Couttet P et al (2007) Requirement of bic/microRNA-155 for normal immune function. Science 316:608–611
Thai TH, Calado DP, Casola S, Ansel KM, Xiao C et al (2007) Regulation of the germinal center response by microRNA-155. Science 316:604–608
O’Connell RM, Kahn D, Gibson WS, Round JL, Scholz RL et al (2010) MicroRNA-155 promotes autoimmune inflammation by enhancing inflammatory T cell development. Immunity 33:607–619
Bluml S, Bonelli M, Niederreiter B, Puchner A, Mayr G et al (2011) Essential role of microRNA-155 in the pathogenesis of autoimmune arthritis in mice. Arthritis Rheum 63:1281–1288
Oertli M, Engler DB, Kohler E, Koch M, Meyer TF et al (2011) MicroRNA-155 is essential for the T cell-mediated control of Helicobacter pylori infection and for the induction of chronic Gastritis and Colitis. J Immunol 187:3578–3586
Sarasin-Filipowicz M, Krol J, Markiewicz I, Heim MH, Filipowicz W (2009) Decreased levels of microRNA miR-122 in individuals with hepatitis C responding poorly to interferon therapy. Nat Med 15:31–33
Liu Z, Sall A, Yang D (2008) MicroRNA: an emerging therapeutic target and intervention tool. Int J Mol Sci 9:978–999
Lanford RE, Hildebrandt-Eriksen ES, Petri A, Persson R, Lindow M et al (2010) Therapeutic silencing of microRNA-122 in primates with chronic hepatitis C virus infection. Science 327:198–201
Fairfax KA, Gantier MP, Mackay F, Williams BR, McCoy CE (2015) IL-10 regulates Aicda expression through miR-155. J Leukoc Biol 97:71–78
Gantier MP, Stunden HJ, McCoy CE, Behlke MA, Wang D et al (2012) A miR-19 regulon that controls NF-kappaB signaling. Nucleic Acids Res 40:8048–8058
Weischenfelt J, Porse J (2008) Bone marrow-derived macrophages (BMM): isolation and application. Cold Spring Harb Protoc 3:1–6
Sarvestani ST, Stunden HJ, Behlke MA, Forster SC, McCoy CE et al (2015) Sequence-dependent off-target inhibition of TLR7/8 sensing by synthetic microRNA inhibitors. Nucleic Acids Res 43:1177–1188
Lennox KA, Owczarzy R, Thomas DM, Walder JA, Behlke MA (2013) Improved performance of anti-miRNA oligonucleotides using a novel non-nucleotide modifier. Mol Ther Nucleic Acids 2:e117
Gantier MP, McCoy CE, Rusinova I, Saulep D, Wang D et al (2011) Analysis of microRNA turnover in mammalian cells following Dicer1 ablation. Nucleic Acids Res 39:5692–5703
Acknowledgements
The authors would like to acknowledge the Health Research Board (HRB) Ireland together with Marie Curie for funding the project from which the experiments included in this chapter are derived. The authors would also like to acknowledge their current funding from the National Health and Medical Research Council (NHMRC) Australia. The authors would like to thank Charlotte Nejad for her thorough editing of this manuscript.
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Lyons, V.G., McCoy, C.E. (2016). Simple Methods to Investigate MicroRNA Induction in Response to Toll-Like Receptors. In: McCoy, C. (eds) Toll-Like Receptors. Methods in Molecular Biology, vol 1390. Humana Press, New York, NY. https://doi.org/10.1007/978-1-4939-3335-8_11
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DOI: https://doi.org/10.1007/978-1-4939-3335-8_11
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