Abstract
Over the last decade imaging flow cytometry (IFC) has become an established technique, as evidenced by its use in over 500 peer-reviewed scientific articles. Nevertheless, it is still an emerging technique with an installed base of less than 5 % that of conventional flow cytometers. In parallel with its adoption, the technology has evolved rapidly, increasing in speed, sensitivity, and real-time data analysis capacity by over an order of magnitude since its introduction. This chapter summarizes IFC’s basic principles of operation and describes the current state of the art.
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References
Kay DB, Cambier JL, Wheeless LL Jr (1979) Imaging in flow. J Histochem Cytochem 27:329–334
Ortyn WE, Hall BE, George TC, Frost K, Basiji DA, Perry DJ, Zimmerman CA, Coder D, Morrisey PJ (2006) Sensitivity measurement and compensation in spectral imaging. Cytometry A 69:852–862
Bezbradica JS, Rosenstein RK, DeMarco RA, Brodsky J, Medzhitov R (2014) A role for the ITAM signaling module in specifying cytokine-receptor functions. Nat Immunol 15:333–342. doi:10.1038/ni.2845
Bonaccorsi I, Morandi B, Antsiferova O, Costa G, Oliveri D, Conte R, Pezzino G, Vermiglio G, Anastasi GP, Navarra G, Münz C, DiCarlo E, Mingari MC, Ferlazzo G (2014) Membrane transfer from tumor cells overcomes deficient phagocytic ability of plasmacytoid dendritic cells for the acquisition and presentation of tumor antigens. J Immunol 192:824–832. doi:10.4049/jimmunol.130103
Zhao W, Minderman H, Russell MW (2014) Identification and characterization of intestinal antigen-presenting cells involved in uptake and processing of a nontoxic recombinant chimeric mucosal immunogen based on cholera toxin using imaging flow cytometry. Clin Vaccine Immunol 21:74–84. doi:10.1128/CVI.00452-13
Waysbort N, Russ D, Chain BM, Friedman N (2013) Coupled IL-2-dependent extracellular feedbacks govern two distinct consecutive phases of CD4 T cell activation. J Immunol 191:5822–5830. doi:10.4049/jimmunol.1301575
Ryszawy D, Sarna M, Rak M, Szpak K, Kedracka-Krok S, Michalik M, Siedlar M, Zuba-Surma E, Burda K, Korohoda W, Madeia Z, Czyz J (2014) Functional links between Snail-1 and Cx43 account for the recruitment of Cx43-positive cells into the invasive front of prostate cancer. Carcinogenesis 35:1920–1930. doi:10.1093/carcin/bgu033
Kefas B, Floyd DH, Comeau L, Frisbee A, Dominquez C, Dipierro CG, Guessous F, Abounader R, Purow B (2013) A miR-297/hypoxia/DGK-α axis regulating glioblastoma survival. Neuro Oncol 15:1652–1663
Franzen CA, Simms PE, Van Huis AF, Foreman KE, Kuo PC, Gupta GN (2014) Characterization of uptake and internalization of exosomes by bladder cancer cells. Biomed Res Int 2014:619829. doi:10.1155/2014/619829
Leigh ND, Bian G, Ding X, Liu H, Aigun-Sunar S, Burdelya LG, Gudkov AV, Cao X (2014) A flagellin-derived toll-like receptor 5 agonist stimulates cytotoxic lymphocyte-mediated tumor immunity. PLoS One 9, e85587. doi:10.1371/journal.pone.0085587
Clarke AJ, Ellinghaus U, Cortini A, Stranks A, Simon AK, Botto M, Vyse TJ (2014) Autophagy is activated in systemic lupus erythematosus and required for plasmablast development. Ann Rheum Dis 74:912–920. doi:10.1136/annrheumdis-2013-204343
van Beers EJ, Samsel L, Mendelsohn L, Salyed R, Fertrin KY, Brantner CA, Daniels MP, Nichols J, McCoy JP, Kato GJ (2014) Imaging flow cytometry for automated detection of hypoxia-induced erythrocyte shape change in sickle cell disease. Am J Hematol 89:598–603. doi:10.1002/ajh.23699
Niswander LM, McGrath KE, Kennedy JC, Palis J (2014) Improved quantitative analysis of primary bone marrow megakaryocytes utilizing imaging flow cytometry. Cytometry A 85:302–312. doi:10.1002/cyto.a.22438
Foudi A, Kramer DJ, Qin J, Ye D, Behlich AS, Mordecai S, Preffer FI, Amzallag A, Ramaswamy S, Hochedlinger K, Orkin SH, Hock H (2014) Distinct, strict requirements for Gfi-1b in adult bone marrow red cell and platelet generation. J Exp Med 211:909–927. doi:10.1084/jem.20131065
Malik J, Kim AR, Tyre KA, Cherukuri AR, Palis J (2013) Erythropoietin critically regulates the terminal maturation of murine and human primitive erythroblasts. Haematologica 98:1778–1787. doi:10.3324/haematol.2013.087361
Ma H, Reyes-Gutierrez P, Pederson T (2013) Visualization of repetitive DNA sequences in human chromosomes with transcription activator-like effectors. Proc Natl Acad Sci U S A 110:21048–21053. doi:10.1073/pnas.1319097110
Barteneva NS, Ponmarev ED, Tsytsykova A, Armant M, Vorobjev IA (2014) Mitochondrial staining allows robust elimination of apoptotic and damaged cells during cell sorting. J Histochem Cytochem 62:265–275. doi:10.1369/0022155413520404
Dias da Silva D, Carmo H, Lynch A, Sylva E (2013) An insight into the hepatocellular death induced by amphetamines, individually and in combination: the involvement of necrosis and apoptosis. Arch Toxicol 87:2165–2185. doi:10.1007/s00204-013-1082-9
Bergquist M, Nurkkala M, Rylander C, Kristiansson E, Hedenstierna G, Lindholm S (2013) Expression of the glucocorticoid receptor is decreased in experimental Staphylococcus aureus sepsis. J Infect 67:574–583. doi:10.1016/j.jinf.2013.07.028
Singh MV, Davidson DC, Jackson JW, Singh VB, Silva J, Ramirez SH, Maggirwar SB (2014) Characterization of platelet-monocyte complexes in HIV-1-infected individuals: possible role in HIV-associated neuroinflammation. J Immunol 192:4674–4684. doi:10.4049/jimmunol.1302318
Caccuri F, Giagulli C, Reichelt J, Martorelli D, Marsico S, Bugatti A, Barone J, Rusnati M, Guzman CA, Dolcetti R, Caruso A (2014) Simian immunodeficiency virus and human immunodeficiency virus type 1 matrix proteins specify different capabilities to modulate B cell growth. J Virol 88:5706–5717. doi:10.1128/JVI.03142-13
Németh T, Tóth A, Hamari Z, Falus A, Éder K, Vágvölgyi C, Guimaraes AJ, Nosanchuk JD, Gácser A (2014) Transcriptome profile of the murine macrophage cell response to Candida parapsilosis. Fungal Genet Biol 65:48–56. doi:10.1016/j.fgb.2014.01.006
Lee YQ, Goh AS, Ch’ng JH, Nosten FH, Preiser PR, Pervaiz S, Yada SK, Tan KS (2014) A high-content phenotypic screen reveals the disruptive potency of quinacrine and 3′,4′-dichlorobenzamil on the digestive vacuole of Plasmodium falciparum. Antimicrob Agents Chemother 58:550–558. doi:10.1128/AAC.01441-13
Maguire O, Tornatore KM, O’Loughlin KL, Venuto RC, Minderman H (2013) Nuclear translocation of nuclear factor of activated T cells (NFAT) as a quantitative phamacodynamic parameter for tacrolimus. Cytometry A 83:1096–1104. doi:10.1002/cyto.a.22401
Trentacoste EM, Shrestha RP, Smith SR, Glé C, Hartmann AC, Hildebrand M, Gerwick WH (2013) Metabolic engineering of lipid catabolism increases microalgal lipid accumulation without compromising growth. Proc Natl Acad Sci U S A 110:19748–19753. doi:10.1073/pnas.1309299110
Kennedy CE, Krieger KB, Sutovsky M, Xu W, Vargovič P, Didion BA, Ellersieck MR, Hennessy ME, Verstegen J, Oko R, Sutovsky P (2014) Protein expression pattern of PAWP in bull spermatozoa is associated with sperm quality and fertility following artificial insemination. Mol Reprod Dev 81:436–449. doi:10.1002/mrd.22309
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Basiji, D.A. (2016). Principles of Amnis Imaging Flow Cytometry. In: Barteneva, N., Vorobjev, I. (eds) Imaging Flow Cytometry. Methods in Molecular Biology, vol 1389. Humana Press, New York, NY. https://doi.org/10.1007/978-1-4939-3302-0_2
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DOI: https://doi.org/10.1007/978-1-4939-3302-0_2
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