Abstract
The preparation of high quality and quantity RNA is desirable for several different applications. The mini-prep protocol described here can be used to obtain high purity, total RNA from the seeds of several plant species, including Helianthus tuberosus L., Helianthus annuus L., Arachis hypogaea L., Zea mays L., Coix lacryma-jobi L., Sesamum indicum L., Phaseolus vulgaris L., and Mucuna pruriens DC. The extracted RNA was compatible for further analyses such as qPCR for RNA and gene expression quantification.
Access this chapter
Tax calculation will be finalised at checkout
Purchases are for personal use only
References
Weitbrecht K, Müller K, Leubner-Metzger G (2011) First off the mark: early seed germination. J Exp Bot 62:3289–3309. doi:10.1093/jxb/err030
Suzuki Y, Kawazu T, Koyama H (2004) RNA isolation from siliques, dry seeds, and other tissues of Arabidopsis thaliana. BioTechniques 37:542–544
Singh RK, Misra A, Sane VA, Nath P (2009) Isolation of high quality RNA from oilseeds of Jatropha curcas. J Plant Biochem Biotechnol 18(1):77–81. doi:10.1007/BF03263299
Li Z, Trick HN (2005) Rapid method for high-quality RNA isolation from seed endosperm containing high levels of starch. Biotechniques 38(6):872–876. doi:10.2144/05386BM05
Wang G, Wang G, Zhang X, Wang F, Song R (2012) Isolation of high quality RNA from cereal seeds containing high levels of starch. Phytochem Anal 23:159–163. doi:10.1002/pca.1337
Ma XB, Yang J (2011) An optimized preparation method to obtain high-quality RNA from dry sunflower seeds. Genet Mol Res 10:160–168. doi:10.4238/vol10-1gmr979
Dang PM, Chen CY (2013) Modified method for combined DNA and RNA isolation from peanut and other oil seeds. Mol Biol Rep 40:1563–1568. doi:10.1007/s11033-012-2204-9
Dash PK (2013) High quality RNA isolation from ployphenol-, polysaccharide- and protein-rich tissues of lentil (Lens culinaris). 3 Biotech 3:109–114. doi:10.1007/s13205-012-0075-3
Nonis A, Vezzaro A, Ruperti B (2012) Evaluation of RNA extraction methods and identification of putative reference genes for real-time quantitative polymerase chain reaction expression studies on olive (Olea europaea L.) fruits. J Agric Food Chem 60:6855–6865. doi:10.1021/jf300419w
Tetlow IJ (2011) Starch biosynthesis in developing seeds. Seed Sci Res 21(1):5–32. doi:10.1017/S0960258510000292
Kumar GN, Iyer S, Knowles NR (2007) Extraction of RNA from fresh, frozen, and lyophilized tuber and root tissues. J Agric Food Chem 55(5):1674–1678. doi:10.1021/jf062941m
Mornkham T, Wangsomnuk PP, Fu YB, Wangsomnuk P, Jogloy S, Patanothai A (2013) Extractions of high quality RNA from seeds of Jerusalem Artichoke and other plant species with high levels of starch and lipid. Plants 2(2):302–316. doi:10.3390/plants2020302
Czechowski T, Stitt M, Altmann T, Udvardi MK, Scheible WR (2005) Genome-wide identification and testing of superior reference genes for transcript normalization in Arabidopsis. Plant Physiol 139(1):5–17. doi:10.1104/pp.105.063743
Acknowledgements
This work was financially supported by the Higher Education Research Promotion and the National Research University Project of Thailand, Office of the Higher Education Commission, through the Food and Functional Food Research Cluster of Khon Kaen University; the research funding from Khon Kaen University to the corresponding author; and by the Thailand Research Fund (TRF), the commission for Higher Education (CHE), and Khon Kaen University (KKU) through the Distinguish Research Professor Grant to Aran Patanothai.
Author information
Authors and Affiliations
Corresponding author
Editor information
Editors and Affiliations
Rights and permissions
Copyright information
© 2016 Springer Science+Business Media New York
About this protocol
Cite this protocol
Wangsomnuk, P.P., Ruttawat, B., Rittithum, W., Wangsomnuk, P., Jogloy, S., Patanothai, A. (2016). RNA Extractions from Difficult to Prepare and High Starch Content Seeds. In: Micic, M. (eds) Sample Preparation Techniques for Soil, Plant, and Animal Samples. Springer Protocols Handbooks. Humana Press, New York, NY. https://doi.org/10.1007/978-1-4939-3185-9_19
Download citation
DOI: https://doi.org/10.1007/978-1-4939-3185-9_19
Publisher Name: Humana Press, New York, NY
Print ISBN: 978-1-4939-3184-2
Online ISBN: 978-1-4939-3185-9
eBook Packages: Springer Protocols