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The Use of Real-Time Reverse Transcription-PCR for Assessing Estrogen Receptor and Estrogen-Responsive Gene Expression

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Estrogen Receptors

Part of the book series: Methods in Molecular Biology ((MIMB,volume 1366))

Abstract

Real-time reverse transcription-polymerase chain reaction (RT-PCR), also known as quantitative RT-PCR (qRT-PCR), is a powerful tool for assessing gene transcription levels. The technique is especially useful for measuring estrogen receptor transcript levels as well as gene expression changes in response to estrogen stimulation as it is quick, accurate, robust, and allows the measurement of gene expression in a variety of tissues and cells. This chapter describes the protocols used for the real-time RT-PCR assay using hydrolysis (TaqMan-type) probes.

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References

  1. Gibson UE, Heid CA, Williams PM (1996) A novel method for real time quantitative RT-PCR. Genome Res 6(10):995–1001

    Article  CAS  Google Scholar 

  2. Wittwer CT, Herrmann MG, Moss AA, Rasmussen RP (1997) Continuous fluorescence monitoring of rapid cycle DNA amplification. Biotechniques 22(1):130–131, 134–138

    Article  CAS  Google Scholar 

  3. Morrison TB, Weis JJ, Wittwer CT (1998) Quantification of low-copy transcripts by continuous SYBR Green I monitoring during amplification. Biotechniques 24(6):954–958, 960, 962

    CAS  PubMed  Google Scholar 

  4. Lee LG, Connell CR, Bloch W (1993) Allelic discrimination by nick-translation PCR with fluorogenic probes. Nucleic Acids Res 21(16):3761–3766

    Article  CAS  Google Scholar 

  5. Tyagi S (1996) Taking DNA probes into a protein world. Nat Biotechnol 14(8):947–948

    Article  CAS  Google Scholar 

  6. Tyagi S, Kramer FR (1996) Molecular beacons: probes that fluoresce upon hybridization. Nat Biotechnol 14(3):303–308

    Article  CAS  Google Scholar 

  7. Whitcombe D, Theaker J, Guy SP, Brown T, Little S (1999) Detection of PCR products using self-probing amplicons and fluorescence. Nat Biotechnol 17(8):804–807

    Article  CAS  Google Scholar 

  8. Arya M, Shergill IS, Williamson M, Gommersall L, Arya N, Patel HR (2005) Basic principles of real-time quantitative PCR. Expert Rev Mol Diagn 5(2):209–219

    Article  CAS  Google Scholar 

  9. Heid CA, Stevens J, Livak KJ, Williams PM (1996) Real time quantitative PCR. Genome Res 6(10):986–994

    Article  CAS  Google Scholar 

  10. Holland PM, Abramson RD, Watson R, Gelfand DH (1991) Detection of specific polymerase chain reaction product by utilizing the 5′–3′ exonuclease activity of Thermus aquaticus DNA polymerase. Proc Natl Acad Sci U S A 88(16):7276–7280

    Article  CAS  Google Scholar 

  11. Gut M, Leutenegger CM, Huder JB, Pedersen NC, Lutz H (1999) One-tube fluorogenic reverse transcription-polymerase chain reaction for the quantitation of feline coronaviruses. J Virol Methods 77(1):37–46

    Article  CAS  Google Scholar 

  12. Derveaux S, Vandesompele J, Hellemans J (2010) How to do successful gene expression analysis using real-time PCR. Methods 50(4):227–230

    Article  CAS  Google Scholar 

  13. Bustin SA, Nolan T (2004) Pitfalls of quantitative real-time reverse-transcription polymerase chain reaction. J Biomol Tech 15(3):155–166

    PubMed  PubMed Central  Google Scholar 

  14. Boda E, Pini A, Hoxha E, Parolisi R, Tempia F (2009) Selection of reference genes for quantitative real-time RT-PCR studies in mouse brain. J Mol Neurosci 37(3):238–253

    Article  CAS  Google Scholar 

  15. Schroder AL, Pelch KE, Nagel SC (2009) Estrogen modulates expression of putative housekeeping genes in the mouse uterus. Endocrine 35(2):211–219

    Article  CAS  Google Scholar 

  16. Zou K, Ing NH (1998) Oestradiol up-regulates oestrogen receptor, cyclophilin, and glyceraldehyde phosphate dehydrogenase mRNA concentrations in endometrium, but down-regulates them in liver. J Steroid Biochem Mol Biol 64(5–6):231–237

    Article  CAS  Google Scholar 

  17. Jurado J, Prieto-Alamo MJ, Madrid-Risquez J, Pueyo C (2003) Absolute gene expression patterns of thioredoxin and glutaredoxin redox systems in mouse. J Biol Chem 278(46):45546–45554

    Article  CAS  Google Scholar 

  18. Castelain S, Descamps V, Thibault V et al (2004) TaqMan amplification system with an internal positive control for HCV RNA quantitation. J Clin Virol 31(3):227–234

    Article  CAS  Google Scholar 

  19. Livak KJ, Schmittgen TD (2001) Analysis of relative gene expression data using real-time quantitative PCR and the 2(-Delta Delta C(T)) Method. Methods 25(4):402–408

    Article  CAS  Google Scholar 

  20. Pfaffl MW (2004) Quantification strategies in real-time PCR. In: Bustin SA (ed) A-Z of quantitative PCR. International University Line, La Jolla, CA, pp 87–112

    Google Scholar 

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Acknowledgements

This work was supported, in part, by NIH P20GM103443. The authors would like to thank Dr. Rozzy Finn for reviewing this chapter.

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Correspondence to Michelle L. Booze .

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Booze, M.L., Eyster, K.M. (2016). The Use of Real-Time Reverse Transcription-PCR for Assessing Estrogen Receptor and Estrogen-Responsive Gene Expression. In: Eyster, K.M. (eds) Estrogen Receptors. Methods in Molecular Biology, vol 1366. Humana Press, New York, NY. https://doi.org/10.1007/978-1-4939-3127-9_3

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  • DOI: https://doi.org/10.1007/978-1-4939-3127-9_3

  • Publisher Name: Humana Press, New York, NY

  • Print ISBN: 978-1-4939-3126-2

  • Online ISBN: 978-1-4939-3127-9

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