Skip to main content

Immunoprecipitation of Plasma Membrane Receptor-Like Kinases for Identification of Phosphorylation Sites and Associated Proteins

  • Protocol
Plant Signal Transduction

Part of the book series: Methods in Molecular Biology ((MIMB,volume 1363))

Abstract

Membrane proteins are difficult to study for numerous reasons. The surface of membrane proteins is relatively hydrophobic and sometimes very unstable, additionally requiring detergents for their extraction from the membrane. This leads to challenges at all levels, including expression, solubilization, purification, identification of associated proteins, and the identification of post-translational modifications. However, recent advances in immunoprecipitation technology allow to isolate membrane proteins efficiently, facilitating the study of protein-protein interactions, the identification of novel associated proteins, and to identify post-translational modifications, such as phosphorylation. Here, we describe an optimized immunoprecipitation protocol for plant plasma membrane receptor-like kinases.

This is a preview of subscription content, log in via an institution to check access.

Access this chapter

Protocol
USD 49.95
Price excludes VAT (USA)
  • Available as PDF
  • Read on any device
  • Instant download
  • Own it forever
eBook
USD 79.99
Price excludes VAT (USA)
  • Available as EPUB and PDF
  • Read on any device
  • Instant download
  • Own it forever
Softcover Book
USD 99.99
Price excludes VAT (USA)
  • Compact, lightweight edition
  • Dispatched in 3 to 5 business days
  • Free shipping worldwide - see info
Hardcover Book
USD 109.99
Price excludes VAT (USA)
  • Durable hardcover edition
  • Dispatched in 3 to 5 business days
  • Free shipping worldwide - see info

Tax calculation will be finalised at checkout

Purchases are for personal use only

Institutional subscriptions

References

  1. Zipfel C (2014) Plant pattern-recognition receptors. Trends Immunol 35:345–351

    Article  CAS  PubMed  Google Scholar 

  2. Jiang J, Zhang C, Wang X (2013) Ligand perception, activation, and early signaling of plant steroid receptor brassinosteroid insensitive 1. J Integr Plant Biol 55:1198–1211

    Article  CAS  PubMed  Google Scholar 

  3. Wu Y, Zhou JM (2013) Receptor-like kinases in plant innate immunity. J Integr Plant Biol 55:1271–1286

    Article  CAS  PubMed  Google Scholar 

  4. Richardson LG, Torii KU (2013) Take a deep breath: peptide signalling in stomatal patterning and differentiation. J Exp Bot 64:5243–5251

    Article  CAS  PubMed  Google Scholar 

  5. Vaid N, Macovei A, Tuteja N (2013) Knights in action: lectin receptor-like kinases in plant development and stress responses. Mol Plant 6:1405–1418

    Article  CAS  PubMed  Google Scholar 

  6. Osakabe Y, Yamaguchi-Shinozaki K, Shinozaki K, Tran LS (2013) Sensing the environment: key roles of membrane-localized kinases in plant perception and response to abiotic stress. J Exp Bot 64:445–458

    Article  CAS  PubMed  Google Scholar 

  7. Antolin-Llovera M, Ried MK, Binder A, Parniske M (2012) Receptor kinase signaling pathways in plant-microbe interactions. Annu Rev Phytopathol 50:451–473

    Article  CAS  PubMed  Google Scholar 

  8. Roux M, Schwessinger B, Albrecht C, Chinchilla D, Jones A, Holton N et al (2011) The Arabidopsis leucine-rich repeat receptor-like kinases BAK1/SERK3 and BKK1/SERK4 are required for innate immunity to hemibiotrophic and biotrophic pathogens. Plant Cell 23:2440–2455

    Article  PubMed Central  CAS  PubMed  Google Scholar 

  9. Kadota Y, Sklenar J, Derbyshire P, Stransfeld L, Asai S, Ntoukakis V et al (2014) Direct regulation of the NADPH oxidase RBOHD by the PRR-associated kinase BIK1 during plant immunity. Mol Cell 54:43–55

    Article  CAS  PubMed  Google Scholar 

  10. Liebrand TW, van den Berg GC, Zhang Z, Smit P, Cordewener JH, America AH et al (2013) Receptor-like kinase SOBIR1/EVR interacts with receptor-like proteins in plant immunity against fungal infection. Proc Natl Acad Sci U S A 110:10010–10015

    Article  PubMed Central  CAS  PubMed  Google Scholar 

  11. Fabregas N, Li N, Boeren S, Nash TE, Goshe MB, Clouse SD et al (2013) The brassinosteroid insensitive1-like3 signalosome complex regulates Arabidopsis root development. Plant Cell 25:3377–3388

    Article  PubMed Central  CAS  PubMed  Google Scholar 

  12. Karlova R, Boeren S, Russinova E, Aker J, Vervoort J, de Vries S (2006) The Arabidopsis SOMATIC EMBRYOGENESIS RECEPTOR-LIKE KINASE1 protein complex includes BRASSINOSTEROID-INSENSITIVE1. Plant Cell 18:626–638

    Article  PubMed Central  CAS  PubMed  Google Scholar 

  13. Macho AP, Schwessinger B, Ntoukakis V, Brutus A, Segonzac C, Roy S et al (2014) A bacterial tyrosine phosphatase inhibits plant pattern recognition receptor activation. Science 343:1509–1512

    Article  CAS  PubMed  Google Scholar 

  14. Macho AP, Zipfel C (2014) Plant PRRs and the activation of innate immune signaling. Mol Cell 54:263–272

    Article  CAS  PubMed  Google Scholar 

  15. Chinchilla D, Zipfel C, Robatzek S, Kemmerling B, Nurnberger T, Jones JD et al (2007) A flagellin-induced complex of the receptor FLS2 and BAK1 initiates plant defence. Nature 448:497–500

    Article  CAS  PubMed  Google Scholar 

  16. Heese A, Hann DR, Gimenez-Ibanez S, Jones AM, He K, Li J et al (2007) The receptor-like kinase SERK3/BAK1 is a central regulator of innate immunity in plants. Proc Natl Acad Sci U S A 104:12217–12222

    Article  PubMed Central  CAS  PubMed  Google Scholar 

  17. Schulze B, Mentzel T, Jehle AK, Mueller K, Beeler S, Boller T et al (2010) Rapid heteromerization and phosphorylation of ligand-activated plant transmembrane receptors and their associated kinase BAK1. J Biol Chem 285:9444–9451

    Article  PubMed Central  CAS  PubMed  Google Scholar 

  18. Schwessinger B, Roux M, Kadota Y, Ntoukakis V, Sklenar J, Jones A et al (2011) Phosphorylation-dependent differential regulation of plant growth, cell death, and innate immunity by the regulatory receptor-like kinase BAK1. PLoS Genet 7:e1002046

    Article  PubMed Central  CAS  PubMed  Google Scholar 

  19. Sun Y, Li L, Macho AP, Han Z, Hu Z, Zipfel C et al (2013) Structural basis for flg22-induced activation of the Arabidopsis FLS2-BAK1 immune complex. Science 342:624–628

    Article  CAS  PubMed  Google Scholar 

  20. Cutler SR, Ehrhardt DW, Griffitts JS, Somerville CR (2000) Random GFP::cDNA fusions enable visualization of subcellular structures in cells of Arabidopsis at a high frequency. Proc Natl Acad Sci U S A 97:3718–3723

    Article  PubMed Central  CAS  PubMed  Google Scholar 

  21. Rath A, Cunningham F, Deber CM (2013) Acrylamide concentration determines the direction and magnitude of helical membrane protein gel shifts. Proc Natl Acad Sci U S A 110:15668–15673

    Article  PubMed Central  CAS  PubMed  Google Scholar 

Download references

Acknowledgements

We thank Sacco de Vries for sharing initial advices on the co-immunoprecipitation protocol, and past and present members of the Zipfel laboratory for discussion and advices. The excellent work of the TSL Proteomics support group is also acknowledged. This work was supported by the Gatsby Charitable Foundation (C.Z.) and the European Research Council (C.Z.). Fellowships from RIKEN Special Postdoctoral Research Fellowship, Excellent Young Researcher Overseas Visit Program, and Uehara Memorial Foundation to Y.K. are acknowledged. A.P.M. was funded by a long-term fellowship from the Federation of European Biochemical Societies.

Author information

Authors and Affiliations

Authors

Corresponding author

Correspondence to Cyril Zipfel .

Editor information

Editors and Affiliations

Rights and permissions

Reprints and permissions

Copyright information

© 2016 Springer Science+Business Media New York

About this protocol

Cite this protocol

Kadota, Y., Macho, A.P., Zipfel, C. (2016). Immunoprecipitation of Plasma Membrane Receptor-Like Kinases for Identification of Phosphorylation Sites and Associated Proteins. In: Botella, J., Botella, M. (eds) Plant Signal Transduction. Methods in Molecular Biology, vol 1363. Humana Press, New York, NY. https://doi.org/10.1007/978-1-4939-3115-6_11

Download citation

  • DOI: https://doi.org/10.1007/978-1-4939-3115-6_11

  • Publisher Name: Humana Press, New York, NY

  • Print ISBN: 978-1-4939-3114-9

  • Online ISBN: 978-1-4939-3115-6

  • eBook Packages: Springer Protocols

Publish with us

Policies and ethics