Skip to main content

Multiparameter Phenotyping of Human PBMCs Using Mass Cytometry

  • Protocol
Immunosenescence

Part of the book series: Methods in Molecular Biology ((MIMB,volume 1343))

Abstract

The standard for single-cell analysis of phenotype and function in recent decades has been fluorescence flow cytometry. Mass cytometry is a newer technology that uses heavy metal ions, rather than fluorochromes, as labels for probes such as antibodies. The binding of these ion-labeled probes to cells is quantitated by mass spectrometry. This greatly increases the number of phenotypic and functional markers that can be probed simultaneously. Here, we review topics that must be considered when adapting existing flow cytometry panels to mass cytometry analysis. We present a protocol and representative panels for surface phenotyping and intracellular cytokine staining (ICS) assays.

This is a preview of subscription content, log in via an institution to check access.

Access this chapter

Protocol
USD 49.95
Price excludes VAT (USA)
  • Available as PDF
  • Read on any device
  • Instant download
  • Own it forever
eBook
USD 84.99
Price excludes VAT (USA)
  • Available as EPUB and PDF
  • Read on any device
  • Instant download
  • Own it forever
Softcover Book
USD 109.99
Price excludes VAT (USA)
  • Compact, lightweight edition
  • Dispatched in 3 to 5 business days
  • Free shipping worldwide - see info
Hardcover Book
USD 109.99
Price excludes VAT (USA)
  • Durable hardcover edition
  • Dispatched in 3 to 5 business days
  • Free shipping worldwide - see info

Tax calculation will be finalised at checkout

Purchases are for personal use only

Institutional subscriptions

References

  1. Kalisky T, Quake SR (2011) Single-cell genomics. Nat Methods 8:311–314

    Article  PubMed  CAS  Google Scholar 

  2. Ornatsky O, Bandura D, Baranov V, Nitz M, Winnik MA, Tanner S (2010) Highly multiparametric analysis by mass cytometry. J Immunol Methods 36:1–20

    Article  Google Scholar 

  3. Bandura DR, Baranov VI, Ornatsky OI, Antonov A, Kinach R, Lou X, Pavlov S, Vorobiev S, Dick JE, Tanner SD (2009) Mass cytometry: technique for real time single cell multitarget immunoassay based on inductively coupled plasma time-of-flight mass spectrometry. Anal Chem 81:6813–6822

    Article  PubMed  CAS  Google Scholar 

  4. Newell EW, Sigal N, Bendall SC, Nolan GP, Davis MM (2012) Cytometry by time-of-flight shows combinatorial cytokine expression and virus-specific cell niches within a continuum of CD8(+) T cell phenotypes. Immunity 36:142–152

    Article  PubMed  CAS  PubMed Central  Google Scholar 

  5. Bendall SC, Simonds EF, Qiu P, Amir el AD, Krutzik PO, Finck R, Bruggner RV, Melamed R, Trejo A, Ornatsky OI, Balderas RS, Plevritis SK, Sachs K, Pe'er D, Tanner SD, Nolan GP (2011) Single-cell mass cytometry of differential immune and drug responses across a human hematopoietic continuum. Science 332:687–696

    Article  PubMed  CAS  PubMed Central  Google Scholar 

  6. Bodenmiller B, Zunder ER, Finck R, Chen TJ, Savig ES, Bruggner RV, Simonds EF, Bendall SC, Sachs K, Krutzik PO, Nolan GP (2012) Multiplexed mass cytometry profiling of cellular states perturbed by small-molecule regulators. Nat Biotechnol 30:858–867

    Article  PubMed  CAS  PubMed Central  Google Scholar 

  7. Behbehani GK, Bendall SC, Clutter MR, Fantl WJ, Nolan GP (2012) Single-cell mass cytometry adapted to measurements of the cell cycle. Cytometry A 81:552–566

    Article  PubMed  PubMed Central  Google Scholar 

  8. Fienberg HG, Simonds EF, Fantl WJ, Nolan GP, Bodenmiller B (2012) A platinum-based covalent viability reagent for single-cell mass cytometry. Cytometry A 81:467–475

    Article  PubMed  Google Scholar 

  9. Maecker HT (2009) Multiparameter flow cytometry monitoring of T cell responses. Methods Mol Biol 485:375–391

    Article  PubMed  CAS  PubMed Central  Google Scholar 

  10. Maecker HT, Frey T, Nomura LE, Trotter J (2004) Selecting fluorochrome conjugates for maximum sensitivity. Cytometry A 62:169–173

    Article  PubMed  Google Scholar 

  11. Rundberg Nilsson A, Bryder D, Pronk CJ (2013) Frequency determination of rare populations by flow cytometry: a hematopoietic stem cell perspective. Cytometry A 83:721–727

    Article  PubMed  Google Scholar 

  12. Ornatsky OI, Kinach R, Bandura DR, Lou X, Tanner SD, Baranov VI, Nitz M, Winnik MA (2008) Development of analytical methods for multiplex bio-assay with inductively coupled plasma mass spectrometry. J Anal At Spectrom 23:463–469

    Article  PubMed  CAS  PubMed Central  Google Scholar 

  13. Lovelace P, Maecker HT (2010) Multiparameter intracellular cytokine staining. Methods Mol Biol 699:165–178

    Article  Google Scholar 

  14. Leipold MD, Maecker HT (2012) Mass cytometry: protocol for daily tuning and running cell samples on a CyTOF mass cytometer. J Vis Exp. doi:10.3791/4398

    PubMed  PubMed Central  Google Scholar 

Download references

Acknowledgments

The authors thank Sean Bendall for helpful discussions, and Sheena Gupta and Meena Malipatlolla for contributing example data. Development of this protocol was funded in part by grant 2 U19 AI057229 S4 from the National Institutes of Health.

Author information

Authors and Affiliations

Authors

Corresponding author

Correspondence to Holden T. Maecker Ph.D. .

Editor information

Editors and Affiliations

Rights and permissions

Reprints and permissions

Copyright information

© 2015 Springer Science+Business Media New York

About this protocol

Cite this protocol

Leipold, M.D., Newell, E.W., Maecker, H.T. (2015). Multiparameter Phenotyping of Human PBMCs Using Mass Cytometry. In: Shaw, A. (eds) Immunosenescence. Methods in Molecular Biology, vol 1343. Humana Press, New York, NY. https://doi.org/10.1007/978-1-4939-2963-4_7

Download citation

  • DOI: https://doi.org/10.1007/978-1-4939-2963-4_7

  • Publisher Name: Humana Press, New York, NY

  • Print ISBN: 978-1-4939-2962-7

  • Online ISBN: 978-1-4939-2963-4

  • eBook Packages: Springer Protocols

Publish with us

Policies and ethics