Abstract
The anaphase-promoting complex/cyclosome (APC/C) is a 1.2 MDa ubiquitin ligase complex with important functions in both proliferating and post-mitotic differentiated cells. In proliferating cells, APC/C controls cell cycle progression by targeting inhibitors of chromosome segregation and mitotic exit for degradation by the 26S proteasome. To understand how APC/C recruits and ubiquitylates its substrate proteins and how these processes are controlled, it is essential to analyze APC/C activity in vitro. In the past, such experiments have been limited by the fact that large quantities of purified APC/C were difficult to obtain and that mutated versions of the APC/C could not be easily generated. In this chapter we review recent advances in generating and purifying recombinant forms of the human APC/C and its co-activators, using methods that are scalable and compatible with mutagenesis. We also describe a method that allows the quantitative analysis of APC/C activity using fluorescently labeled substrate proteins.
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References
Pines J (2011) Cubism and the cell cycle: the many faces of the APC/C. Nat Rev Mol Cell Biol 12:427–438
Primorac I, Musacchio A (2013) Panta rhei: the APC/C at steady state. J Cell Biol 201:177–189
Delgado-Esteban M, García-Higuera I, Maestre C et al (2013) APC/C-Cdh1 coordinates neurogenesis and cortical size during development. Nat Commun 4:2879
Eguren M, Porlan E, Manchado E et al (2013) The APC/C cofactor Cdh1 prevents replicative stress and p53-dependent cell death in neural progenitors. Nat Commun 4:2880
Chang L, Barford D (2014) Insights into the anaphase-promoting complex: a molecular machine that regulates mitosis. Curr Opin Struct Biol 29:1–9
Duda DM, Scott DC, Calabrese MF et al (2011) Structural regulation of cullin-RING ubiquitin ligase complexes. Curr Opin Struct Biol 21:257–264
Craney A, Rape M (2013) Dynamic regulation of ubiquitin-dependent cell cycle control. Curr Opin Cell Biol 25:704–710
Frye JJ, Brown NG, Petzold G et al (2013) Electron microscopy structure of human APC/CCDH1–EMI1 reveals multimodal mechanism of E3 ligase shutdown. Nat Struct Mol Biol 20:827–835
Chang L, Zhang Z, Yang J et al (2014) Molecular architecture and mechanism of the anaphase-promoting complex. Nature 513:388–393
Chang L, Zhang Z, Yang J et al (2015) Atomic structure of the APC/C and its mechanism of protein ubiquitination, Nature. advance online publication.
Herzog F, Peters J (2005) Large‐scale purification of the vertebrate anaphase‐promoting complex/cyclosome. Methods Enzymol 398:175–195, Elsevier
Kraft C, Gmachl M, Peters JM (2006) Methods to measure ubiquitin-dependent proteolysis mediated by the anaphase-promoting complex. Methods 38:39–51
Schreiber A, Stengel F, Zhang Z et al (2011) Structural basis for the subunit assembly of the anaphase-promoting complex. Nature 470:227–232
Uzunova K, Dye BT, Schutz H et al (2012) APC15 mediates CDC20 autoubiquitylation by APC/CMCC and disassembly of the mitotic checkpoint complex. Nat Struct Mol Biol 19:1116–1123
Zhang Z, Yang J, Kong EH et al (2013) Recombinant expression, reconstitution and structure of human anaphase-promoting complex (APC/C). Biochem J 449:365–371
Dimova NV, Hathaway NA, Lee B-H et al (2012) APC/C-mediated multiple monoubiquitylation provides an alternative degradation signal for cyclin B1. Nat Cell Biol 14:168–176
King RW, Glotzer M, Kirschner MW (1996) Mutagenic analysis of the destruction signal of mitotic cyclins and structural characterization of ubiquitinated intermediates. Mol Biol Cell 7:1343–1357
Jin L, Williamson A, Banerjee S et al (2008) Mechanism of ubiquitin-chain formation by the human anaphase-promoting complex. Cell 133:653–665
Kirkpatrick DS, Hathaway NA, Hanna J et al (2006) Quantitative analysis of in vitro ubiquitinated cyclin B1 reveals complex chain topology. Nat Cell Biol 8:700–710
Meyer H-J, Rape M (2014) Enhanced protein degradation by branched ubiquitin chains. Cell 157:910–921
Wu T, Merbl Y, Huo Y et al (2010) UBE2S drives elongation of K11-linked ubiquitin chains by the Anaphase-Promoting Complex. Proc Natl Acad Sci 107:1355–1360
Brown NG, Watson ER, Weissmann F et al (2014) Mechanism of polyubiquitination by human anaphase-promoting complex: RING repurposing for ubiquitin chain assembly. Mol Cell 56:246–260
Eletr ZM, Huang DT, Duda DM et al (2005) E2 conjugating enzymes must disengage from their E1 enzymes before E3-dependent ubiquitin and ubiquitin-like transfer. Nat Struct Mol Biol 12:933–934
Pickart CM, Raasi S (2005) Controlled synthesis of polyubiquitin chains. Methods Enzymol 399:21–36
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Jarvis, M.A., Brown, N.G., Watson, E.R., VanderLinden, R., Schulman, B.A., Peters, JM. (2016). Measuring APC/C-Dependent Ubiquitylation In Vitro. In: Coutts, A., Weston, L. (eds) Cell Cycle Oscillators. Methods in Molecular Biology, vol 1342. Humana Press, New York, NY. https://doi.org/10.1007/978-1-4939-2957-3_18
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DOI: https://doi.org/10.1007/978-1-4939-2957-3_18
Publisher Name: Humana Press, New York, NY
Print ISBN: 978-1-4939-2956-6
Online ISBN: 978-1-4939-2957-3
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