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The Expression, Purification, and Structure Determination of BamA from E. coli

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The BAM Complex

Part of the book series: Methods in Molecular Biology ((MIMB,volume 1329))

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Abstract

In gram-negative bacteria, assembly of outer membrane proteins requires the multicomponent β-barrel assembly machinery (BAM) complex, of which BamA is an essential and evolutionarily conserved integral outer membrane protein. To understand how BamA facilitates outer membrane protein biogenesis, it is important to obtain sufficient amounts of purified recombinant BamA protein for in vitro functional analysis and structure determination. In this chapter, we describe the protocol that we used in our laboratory for the cloning, expression, and purification of E. coli BamA and its N-terminal deletion variants for in vitro functional studies and for structure determination of the β-barrel domain alone (residues 426–810).

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References

  1. Knowles TJ, Scott-Tucker A, Overduin M et al (2009) Membrane protein architects: the role of the BAM complex in outer membrane protein assembly. Nat Rev Microbiol 7(3):206–214

    Article  CAS  PubMed  Google Scholar 

  2. Wu T, Malinverni J, Ruiz N et al (2005) Identification of a multicomponent complex required for outer membrane biogenesis in Escherichia coli. Cell 121(2):235–245

    Article  CAS  PubMed  Google Scholar 

  3. Hagan CL, Silhavy TJ, Kahne D (2011) beta-Barrel membrane protein assembly by the Bam complex. Annu Rev Biochem 80:189–210

    Article  CAS  PubMed  Google Scholar 

  4. Ricci DP, Silhavy TJ (2012) The Bam machine: a molecular cooper. Biochim Biophys Acta 1818(4):1067–1084

    Article  CAS  PubMed  Google Scholar 

  5. Rigel NW, Silhavy TJ (2012) Making a beta-barrel: assembly of outer membrane proteins in Gram-negative bacteria. Curr Opin Microbiol 15(2):189–193

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  6. Gentle IE, Burri L, Lithgow T (2005) Molecular architecture and function of the Omp85 family of proteins. Mol Microbiol 58(5):1216–1225

    Article  CAS  PubMed  Google Scholar 

  7. Hagan CL, Kim S, Kahne D (2010) Reconstitution of outer membrane protein assembly from purified components. Science 328(5980):890–892

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  8. Otwinowski Z, Minor W (1997) Processing of X-ray diffraction data collected in oscillation mode. Methods Enzymol 276:307–326

    Article  CAS  Google Scholar 

  9. Collaborative Computational Project N (1994) The CCP4 suite: programs for protein crystallography. Acta Crystallogr D Biol Crystallogr 50(Pt 5):760–763

    Article  Google Scholar 

  10. Noinaj N, Kuszak AJ, Gumbart JC et al (2013) Structural insight into the biogenesis of beta-barrel membrane proteins. Nature 501(7467):385–390

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  11. Adams PD, Grosse-Kunstleve RW, Hung LW et al (2002) PHENIX: building new software for automated crystallographic structure determination. Acta Crystallogr D Biol Crystallogr 58(Pt 11):1948–1954

    Article  PubMed  Google Scholar 

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Acknowledgements

The work was supported by grants from the Ministry of Science and Technology and the National Natural Science Foundation of China.

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Correspondence to Yihua Huang .

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Ni, D., Huang, Y. (2015). The Expression, Purification, and Structure Determination of BamA from E. coli . In: Buchanan, S., Noinaj, N. (eds) The BAM Complex. Methods in Molecular Biology, vol 1329. Humana Press, New York, NY. https://doi.org/10.1007/978-1-4939-2871-2_13

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  • DOI: https://doi.org/10.1007/978-1-4939-2871-2_13

  • Publisher Name: Humana Press, New York, NY

  • Print ISBN: 978-1-4939-2870-5

  • Online ISBN: 978-1-4939-2871-2

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