Skip to main content

Kinase Activity and Specificity Assay Using Synthetic Peptides

  • Protocol

Part of the book series: Methods in Molecular Biology ((MIMB,volume 1306))

Abstract

Phosphorylation of substrate proteins by protein kinases can lead to activation or inactivation of signaling pathways or metabolic processes. Precise understanding of activity and specificity of protein kinases are important questions in characterization of kinase functions. Here, we describe a procedure to study kinase activity and specificity using kinase-GFP complexes purified from plant material and synthetic peptides as substrates. Magnetic GFP beads allow purifying receptor-like kinase-GFP complexes from microsomal fractions. Kinase-GFP complexes are then incubated with ATP and the synthetic peptides for kinase reaction. Phosphorylation of substrate peptides is then identified and quantified by mass spectrometry.

This is a preview of subscription content, log in via an institution.

Buying options

Protocol
USD   49.95
Price excludes VAT (USA)
  • Available as PDF
  • Read on any device
  • Instant download
  • Own it forever
eBook
USD   89.00
Price excludes VAT (USA)
  • Available as EPUB and PDF
  • Read on any device
  • Instant download
  • Own it forever
Softcover Book
USD   119.00
Price excludes VAT (USA)
  • Compact, lightweight edition
  • Dispatched in 3 to 5 business days
  • Free shipping worldwide - see info
Hardcover Book
USD   109.99
Price excludes VAT (USA)
  • Durable hardcover edition
  • Dispatched in 3 to 5 business days
  • Free shipping worldwide - see info

Tax calculation will be finalised at checkout

Purchases are for personal use only

Learn about institutional subscriptions

Springer Nature is developing a new tool to find and evaluate Protocols. Learn more

References

  1. Grefen C, Harter K (2004) Plant two-component systems: principles, functions, complexity and cross talk. Planta 219(5):733–742

    Article  CAS  PubMed  Google Scholar 

  2. Trentini DB, Fuhrmann J, Mechtler K, Clausen T (2014) Chasing phosphoarginine proteins: development of a selective enrichment method using a phosphatase trap. Mol Cell Proteomics mcp.O113.035790

    Google Scholar 

  3. Zulawski M, Schulze G, Braginets R, Hartmann S, Schulze WX (2014) The Arabidopsis Kinome: phylogeny and evolutionary insights into functional diversification. BMC Genomics 15(1):548

    Article  PubMed Central  PubMed  Google Scholar 

  4. Zulawski M, Braginets R, Schulze WX (2013) PhosPhAt goes kinases – searchable protein kinase target information in the plant phosphorylation site database PhosPhAt. Nucleic Acids Res 41(D1):D1176–D1184

    Article  PubMed Central  CAS  PubMed  Google Scholar 

  5. Peck SC (2005) Update on proteomics in Arabidopsis. Where do we go from here? Plant Physiol 138:591–599

    Article  PubMed Central  CAS  PubMed  Google Scholar 

  6. Zhang S, Jin CD, Roux SJ (1993) Casein kinase II-type protein kinase from pea cytoplasm and its inactivation by alkaline phosphatase in vitro. Plant Physiol 103(3):955–962, doi: 103/3/955 [pii]

    Article  PubMed Central  CAS  PubMed  Google Scholar 

  7. Zhang S, Klessig DF (1997) Salicylic acid activates a 48-kD MAP kinase in tobacco. Plant Cell 9(5):809–824

    Article  PubMed Central  CAS  PubMed  Google Scholar 

  8. Gao M, Liu J, Bi D, Zhang Z, Cheng F, Chen S, Zhang Y (2008) MEKK1, MKK1/MKK2 and MPK4 function together in a mitogen-activated protein kinase cascade to regulate innate immunity in plants. Cell Res 18(12):1190–1198

    Article  CAS  PubMed  Google Scholar 

  9. Popescu SC, Popescu GV, Bachan S, Zhang Z, Gerstein M, Snyder M, Dinesh-Kumar SP (2009) MAPK target networks in Arabidopsis thaliana revealed using functional protein microarrays. Genes Dev 23:80–92

    Article  PubMed Central  CAS  PubMed  Google Scholar 

  10. de la Fuente van Bentem S, Anrather D, Dohnal I, Roitinger E, Csaszar E, Joore J, Buijnink J, Carreri A, Forzani C, Lorkovic ZJ, Barta A, Lecourieux D, Verhounig A, Jonak C, Hirt H (2008) Site-specific phosphorylation profiling of Arabidopsis proteins by mass spectrometry and peptide chip analysis. J Proteome Res 7(6):2458–2470

    Article  CAS  PubMed  Google Scholar 

  11. Clouse SD, Sasse JM (1998) Brassinosteroids: essential regulators of plant growth and development. Annu Rev Plant Phys 49:427–451. doi:10.1146/annurev.arplant.49.1.427

    Article  CAS  Google Scholar 

  12. Mathis G (1995) Probing molecular interactions with homogeneous techniques based on rare earth cryptates and fluorescence energy transfer. Clin Chem 41(9):1391–1397

    CAS  PubMed  Google Scholar 

  13. Wu JJ (2002) Comparison of SPA, FRET, and FP for kinase assays. Meth Mol Biol 190:65–85

    CAS  Google Scholar 

  14. Huang Y, Houston NL, Tovar-Mendez A, Stevenson SE, Miernyk JA, Randall DD, Thelen JJ (2010) A quantitative mass spectrometry-based approach for identifying protein kinase-clients and quantifying kinase activity. Anal Biochem 402(1):69–76

    Article  CAS  PubMed  Google Scholar 

  15. Wu XN, Sanchez-Rodriguez C, Pertl-Obermeyer H, Obermeyer G, Schulze WX (2013) Sucrose-induced receptor kinase SIRK1 regulates plasma membrane aquaporins in Arabidopsis. Mol Cell Proteomics 12(10):2856–2873

    Article  PubMed Central  CAS  PubMed  Google Scholar 

  16. She J, Han Z, Kim TW, Wang J, Cheng W, Chang J, Shi S, Yang M, Wang ZY, Chai J (2011) Structural insight into brassinosteroid perception by BRI1. Nature 474(7352):472–476

    Article  PubMed Central  CAS  PubMed  Google Scholar 

  17. Placzek EA, Plebanek MP, Lipchik AM, Kidd SR, Parker LL (2010) A peptide biosensor for detecting intracellular Abl kinase activity using matrix-assisted laser desorption/ionization time-of-flight mass spectrometry. Anal Biochem 397(1):73–78

    Article  PubMed Central  CAS  PubMed  Google Scholar 

  18. Rappsilber J, Ishihama Y, Mann M (2003) Stop and go extraction tips for matrix-assisted laser desorption/ionization, nanoelectrospray, and LC/MS sample pretreatment in proteomics. Anal Chem 75(3):663–670

    Article  CAS  PubMed  Google Scholar 

  19. Cox J, Mann M (2008) MaxQuant enables high peptide identification rates, individualized p.p.b.-range mass accuracies and proteome-wide protein quantification. Nat Biotechnol 26(12):1367–1372

    Article  CAS  PubMed  Google Scholar 

Download references

Acknowledgement

Thanks to Dr. Heidi Pertl-Obermeyer for optimization of the microsome preparation protocol.

Author information

Authors and Affiliations

Authors

Corresponding author

Correspondence to Waltraud X. Schulze .

Editor information

Editors and Affiliations

Rights and permissions

Reprints and permissions

Copyright information

© 2015 Springer Science+Business Media New York

About this protocol

Cite this protocol

Wu, X.N., Schulze, W.X. (2015). Kinase Activity and Specificity Assay Using Synthetic Peptides. In: Schulze, W. (eds) Plant Phosphoproteomics. Methods in Molecular Biology, vol 1306. Humana Press, New York, NY. https://doi.org/10.1007/978-1-4939-2648-0_7

Download citation

  • DOI: https://doi.org/10.1007/978-1-4939-2648-0_7

  • Publisher Name: Humana Press, New York, NY

  • Print ISBN: 978-1-4939-2647-3

  • Online ISBN: 978-1-4939-2648-0

  • eBook Packages: Springer Protocols

Publish with us

Policies and ethics