Abstract
Hepatocellular carcinoma (HCC) is the third most common cause of cancer death worldwide. Hepatocarcinogenesis is a complex, multistep process. It is now recognized that HCC is a both genetic and epigenetic disease; genetic and epigenetic components cooperate at all stages of hepatocarcinogenesis. Epigenetic changes involve aberrant DNA methylation, posttranslational histone modifications and aberrant expression of microRNAs all of which can affect the expression of oncogenes, tumor suppressor genes and other tumor-related genes and alter the pathways in cancer development. Several risk factors for HCC, including hepatitis B and C virus infections and exposure to the chemical carcinogen aflatoxin B1 have been found to influence epigenetic changes. Their interactions could play an important role in the initiation and progression of HCC. Discovery and detection of biomarkers for epigenetic changes is a promising area for early diagnosis and risk prediction of HCC.
Access this chapter
Tax calculation will be finalised at checkout
Purchases are for personal use only
References
Schafer DF, Sorrell MF (1999) Hepatocellular carcinoma. Lancet 353:1253–1257
Center MM, Jemal A (2011) International trends in liver cancer incidence rates. Cancer Epidemiol Biomarkers Prev 20:2362–2368
El-Serag HB, Mason AC (1999) Rising incidence of hepatocellular carcinoma in the United States. New Engl J Med 340:745–750
Chen CJ, Yu MW, Liaw YF (1997) Epidemiologic characteristics and risk factors of hepatocellular carcinoma. J Gastroenterol Hepatol 12:S294–S308
Chen SY, Wang LY, Lunn R, Tsai WY, Lee PH, Lee CS et al (2002) Polycyclic aromatic hydrocarbon-DNA adducts in liver tissues of hepatocellular carcinoma patients and controls. Int J Cancer 99:14–21
Santella RM, Zhang YJ, Hsieh LL, Young TL, Lu XQ, Lee BM et al (1991) Immunological methods for monitoring human expsoure to benzo[a]pyrene and aflatoxin B1: measurement of carcinogen adducts. In: Vanderlaan M (ed) Immunoassays for Monitoring human exposure to toxic chemicals. ACS Publications, Washington, DC, pp 229–245
Herath NI, Leggett BA, MacDonald GA (2006) Review of genetic and epigenetic alterations in hepatocarcinogenesis. J Gastroenterol Hepatol 21:15–21
Thorgeirsson SS, Grisham JW (2002) Molecular pathogenesis of human hepatocellular carcinoma. Nat Genet 31:339–346
Baylin SB, Herma JG (2000) DNA hypermethylation in tumorigenesis: epigenetics joins genetics. Trends Genet 16:168–174
Jones PA, Laird PW (1999) Cancer epigenetics comes of age. Nat Genet 21:163–167
Calvisi DF, Ladu S, Gorden A, Farina M, Lee JS, Conner EA et al (2007) Mechanistic and prognostic significance of aberrant methylation in the molecular pathogenesis of human hepatocellular carcinoma. J Clin Invest 117:2713–2722
Nishida N, Goel A (2011) Genetic and epigenetic signatures in human hepatocellular carcinoma: a systematic review. Curr Genomics 12:130–137
Baylin SB (2005) DNA methylation and gene silencing in cancer. Nat Clin Pract Oncol 2(Suppl 1):S4–S11
Herceg Z (2007) Epigenetics and cancer: towards an evaluation of the impact of environmental and dietary factors. Mutagenesis 22:91–103
Yang JD, Roberts LR (2010) Epidemiology and management of hepatocellular carcinoma. Infect Dis Clin North Am 24:899–919, viii
Libbrecht L, Desmet V, Roskams T (2005) Preneoplastic lesions in human hepatocarcinogenesis. Liver Int 25:16–27
Esteller M, Corn PG, Baylin SB, Herman JG (2001) A gene hypermethylation profile of human cancer. Cancer Res 61:3225–3229
Jones PA, Baylin SB (2002) The fundamental role of epigenetic events in cancer. Nat Rev Genet 3:415–428
Irizarry RA, Ladd-Acosta C, Wen B, Wu Z, Montano C, Onyango P et al (2009) The human colon cancer methylome shows similar hypo- and hypermethylation at conserved tissue-specific CpG island shores. Nat Genet 41:178–186
Rakyan VK, Down TA, Balding DJ, Beck S (2011) Epigenome-wide association studies for common human diseases. Nat Rev Genet 12:529–541
Matsuzaki K, Deng G, Tanaka H, Kakar S, Miura S, Kim YS (2005) The relationship between global methylation level, loss of heterozygosity, and microsatellite instability in sporadic colorectal cancer. Clin Cancer Res 11:8564–8569
Toyota M, Issa JP (2005) Epigenetic changes in solid and hematopoietic tumors. Semin Oncol 32:521–530
Chan AO, Rashid A (2006) CpG island methylation in precursors of gastrointestinal malignancies. Curr Mol Med 6:401–408
Zhang YJ, Ahsan H, Chen Y, Lunn RM, Wang LY, Chen SY et al (2002) High frequency of promoter hypermethylation of the RASSF1A and p16 genes and its relationship to aflatoxin B1-DNA adducts level in human hepatocellular carcinoma. Mol Carcinogenesis 35:85–92
Liew CT, Li HM, Lo KW, Leow CK, Chan JY, Hin LY et al (1999) High frequency of p16INK4A gene alterations in hepatocellular carcinoma. Oncogene 18:789–795
Wong IH, Lo YM, Zhang J, Liew CT, Ng MH, Wong N et al (1999) Detection of aberrant p16 methylation in the plasma and serum of liver cancer patients. Cancer Res 59:71–73
Herman JG, Civin CI, Issa JP, Collector MI, Sharkis SJ, Baylin SB (1997) Distinct patterns of inactivation of p15INK4B and p16INK4A characterize the major types of hematological malignancies. Cancer Res 57:837–841
Wong IH, Lo YM, Yeo W, Lau WY, Johnson PJ (2000) Frequent p15 promoter methylation in tumor and peripheral blood from hepatocellular carcinoma patients. Clin Cancer Res 6:3516–3521
Edamoto Y, Hara A, Biernat W, Terracciano L, Cathomas G, Riehle HM et al (2003) Alterations of RB1, p53 and Wnt pathways in hepatocellular carcinomas associated with hepatitis C, hepatitis B and alcoholic liver cirrhosis. Int J Cancer 106:334–341
Zhong S, Tang MW, Yeo W, Liu C, Lo YM, Johnson PJ (2002) Silencing of GSTP1 gene by CpG island DNA hypermethylation in HBV-associated hepatocellular carcinomas. Clin Cancer Res 8:1087–1092
Zhang YJ, Chen Y, Ahsan H, Lunn RM, Chen SY, Lee PH et al (2005) Silencing of glutathione S-transferase P1 by promoter hypermethylation and its relationship to environmental chemical carcinogens in hepatocellular carcinoma. Cancer Lett 221:135–143
Okochi O, Hibi K, Sakai M, Inoue S, Takeda S, Kaneko T et al (2003) Methylation-mediated silencing of SOCS-1 gene in hepatocellular carcinoma derived from cirrhosis. Clin Cancer Res 9:5295–5298
Yang B, Guo M, Herman JG, Clark DP (2003) Aberrant promoter methylation profiles of tumor suppressor genes in hepatocellular carcinoma. Am J Pathol 163:1101–1107
Zhang YJ, Wu HC, Shen J, Li H, Wang L, Yu MW et al (2009) Silencing of Hint1, a novel tumor suppressor gene, by promoter hypermethylation in hepatocellular carcinoma. Cancer Lett 275:277–284
Niwa Y, Kanda H, Shikauchi Y, Saiura A, Matsubara K, Kitagawa T et al (2005) Methylation silencing of SOCS-3 promotes cell growth and migration by enhancing JAK/STAT and FAK signalings in human hepatocellular carcinoma. Oncogene 24:6406–6417
Piao GH, Piao WH, He Y, Zhang HH, Wang GQ, Piao Z (2008) Hyper-methylation of RIZ1 tumor suppressor gene is involved in the early tumorigenesis of hepatocellular carcinoma. Histol Histopathol 23:1171–1175
Zhang YJ, Chen Y, Ahsan H, Lunn RM, Lee PH, Chen CJ et al (2003) Inactivation of the DNA repair gene O-6-methylguanine-DNA methyltransferase by promoter hypermethylation and its relationship to aflatoxin B-1-DNA adducts and p53 mutation in hepatocellular carcinoma. Int J Cancer 103:440–444
Herceg Z, Paliwal A (2011) Epigenetic mechanisms in hepatocellular carcinoma: how environmental factors influence the epigenome. Mutat Res 727:55–61
Zhong S, Yeo W, Tang M, Wong N, Johnson PJ (2002) Intensive hypermethylation of the CpG island of Ras Association Domain Family 1A (RASSF1A) in HBV-associated heptocellular carcinoma abstract #5578. Proc Am Assoc Cancer Res 43:1125–1126
Jicai Z, Zongtao Y, Jun L, Haiping L, Jianmin W, Lihua H (2006) Persistent infection of hepatitis B virus is involved in high rate of p16 methylation in hepatocellular carcinoma. Mol Carcinog 45:530–536
Zhu R, Li BZ, Li H, Ling YQ, Hu XQ, Zhai WR et al (2007) Association of p16INK4A hypermethylation with hepatitis B virus X protein expression in the early stage of HBV-associated hepatocarcinogenesis. Pathol Int 57:328–336
Feng QHS, Das T, Huang J, Feng Z, Gretch D (2013) Epigenetic mechanisms in hepatitis C virus-associated hepatocellular carcinoma: a potential new link between stem cells, virology and cancer. Am Med J 4:21–35
Lambert MP, Paliwal A, Vaissiere T, Chemin I, Zoulim F, Tommasino M et al (2011) Aberrant DNA methylation distinguishes hepatocellular carcinoma associated with HBV and HCV infection and alcohol intake. J Hepatol 54:705–715
Lunn RM, Zhang YJ, Wang LY, Chen CJ, Lee PH, Lee CS et al (1997) p53 Mutations, chronic hepatitis B virus infection, and aflatoxin exposure in hepatocellular carcinoma in Taiwan. Cancer Res 57:3471–3477
Zhang YJ, Rossner P, Chen Y, Agrawal M, Wang Q, Wang L et al (2006) Aflatoxin B1 and polycyclic aromatic hydrocarbon adducts, p53 mutations and p16 methylation in liver tissue and plasma of hepatocellular carcinoma patients. Int J Cancer 119:985–991
Baylin SB, Ohm JE (2006) Epigenetic gene silencing in cancer – a mechanism for early oncogenic pathway addiction? Nat Rev Cancer 6:107–116
Rivenbark AG, Coleman WB (2007) The use of epigenetic biomarkers for preclinical detection of hepatocellular carcinoma: potential for noninvasive screening of high-risk populations. Clin Cancer Res 13:2309–2312
Zhang YJ, Wu HC, Shen J, Ahsan H, Tsai WY, Yang HI et al (2007) Predicting hepatocellular carcinoma by detection of aberrant promoter methylation in serum DNA. Clin Cancer Res 13:2378–2384
Rollins RA, Haghighi F, Edwards JR, Das R, Zhang MQ, Ju J et al (2006) Large-scale structure of genomic methylation patterns. Genome Res 16:157–163
Das R, Dimitrova N, Xuan Z, Rollins RA, Haghighi F, Edwards JR et al (2006) Computational prediction of methylation status in human genomic sequences. Proc Natl Acad Sci U S A 103:10713–10716
Fouse SD, Nagarajan RO, Costello JF (2010) Genome-scale DNA methylation analysis. Epigenomics 2:105–117
Bibikova M, Fan JB (2009) GoldenGate(R) assay for DNA methylation profiling. Methods Mol Biol 507:149–163
Ammerpohl O, Pratschke J, Schafmayer C, Haake A, Faber W, von Kampen O et al (2012) Distinct DNA methylation patterns in cirrhotic liver and hepatocellular carcinoma. Int J Cancer 130:1319–1328
Gao W, Kondo Y, Shen L, Shimizu Y, Sano T, Yamao K et al (2008) Variable DNA methylation patterns associated with progression of disease in hepatocellular carcinomas. Carcinogenesis 29:1901–1910
Shitani M, Sasaki S, Akutsu N, Takagi H, Suzuki H, Nojima M et al (2012) Genome-wide analysis of DNA methylation identifies novel cancer-related genes in hepatocellular carcinoma. Tumour Biol 33 [Epub ahead of print]
Shin SH, Kim BH, Jang JJ, Suh KS, Kang GH (2010) Identification of novel methylation markers in hepatocellular carcinoma using a methylation array. J Korean Med Sci 25:1152–1159
Hernandez-Vargas H, Lambert MP, Calvez-Kelm F, Gouysse G, McKay-Chopin S, Tavtigian SV et al (2010) Hepatocellular carcinoma displays distinct DNA methylation signatures with potential as clinical predictors. PLoS One 5:e9749
Archer KJ, Mas VR, Maluf DG, Fisher RA (2010) High-throughput assessment of CpG site methylation for distinguishing between HCV-cirrhosis and HCV-associated hepatocellular carcinoma. Mol Genet Genomics 283:341–349
Shen L, Kondo Y, Guo Y, Zhang J, Zhang L, Ahmed S et al (2007) Genome-wide profiling of DNA methylation reveals a class of normally methylated CpG island promoters. PLoS Genet 3:2023–2036
Shen J, Wang S, Zhang YJ, Wu HC, Kibriya MG, Jasmine F et al (2013) Exploring genome-wide DNA methylation profiles altered in hepatocellular carcinoma using Infinium HumanMethylation 450 BeadChips. Epigenetics 8:34–43
Revill K, Wang T, Lachenmayer A, Kojima K, Harrington A, Li J et al (2013) Genome-wide methylation analysis and epigenetic unmasking identify tumor suppressor genes in hepatocellular carcinoma. Gastroenterology 145:1424–1435
Tao R, Li J, Xin J, Wu J, Guo J, Zhang L et al (2011) Methylation profile of single hepatocytes derived from hepatitis B virus-related hepatocellular carcinoma. PLoS One 6:e19862
Lin CH, Hsieh SY, Sheen IS, Lee WC, Chen TC, Shyu WC et al (2001) Genome-wide hypomethylation in hepatocellular carcinogenesis. Cancer Res 61:4238–4243
Wilson AS, Power BE, Molloy PL (2007) DNA hypomethylation and human diseases. Biochimica et Biophysica Acta (BBA) Rev Cancer 1775:138–162
Jeanpierre M (1994) Human satellites 2 and 3. Ann Genet 37:163–171
Ehrlich M (2002) DNA methylation in cancer: too much, but also too little. Oncogene 21:5400–5413
Ushijima T, Morimura K, Hosoya Y, Okonogi H, Tatematsu M, Sugimura T et al (1997) Establishment of methylation-sensitive-representational difference analysis and isolation of hypo- and hypermethylated genomic fragments in mouse liver tumors. Proc Natl Acad Sci U S A 94:2284–2289
Kim MJ, White-Cross JA, Shen L, Issa JP, Rashid A (2009) Hypomethylation of long interspersed nuclear element-1 in hepatocellular carcinomas. Mod Pathol 22:442–449
Takai D, Yagi Y, Habib N, Sugimura T, Ushijima T (2000) Hypomethylation of LINE1 retrotransposon in human hepatocellular carcinomas, but not in surrounding liver cirrhosis. Jpn J Clin Oncol 30:306–309
Calvisi DF, Simile MM, Ladu S, Pellegrino R, De Murtas V, Pinna F et al (2007) Altered methionine metabolism and global DNA methylation in liver cancer: relationship with genomic instability and prognosis. Int J Cancer 121:2410–2420
Lee H, Kim BH, Cho NY, Yoo EJ, Choi M, Shin S et al (2009) Prognostic implications of and relationship between CpG island hypermethylation and repetitive DNA hypomethylation in hepatocellular carcinoma. Clin Cancer Res 15:812–820
Lee JO, Kwun HJ, Jung JK, Choi KH, Min DS, Jang KL (2005) Hepatitis B virus X protein represses E-cadherin expression via activation of DNA methyltransferase 1. Oncogene 24:6617–6625
Park IY, Sohn BH, Yu E, Suh DJ, Chung YH, Lee JH et al (2007) Aberrant epigenetic modifications in hepatocarcinogenesis induced by hepatitis B virus X protein. Gastroenterology 132:1476–1494
Zhang YJ, Wu HC, Yazici H, Yu MW, Lee PH, Santella RM (2012) Global hypomethylation in hepatocellular carcinoma and its relationship to aflatoxin B(1) exposure. World J Hepatol 4:169–175
Gao Y, Baccarelli A, Shu XO, Ji BT, Yu K, Tarantini L et al (2012) Blood leukocyte Alu and LINE-1 methylation and gastric cancer risk in the Shanghai Women’s Health Study. Br J Cancer 106:585–591
Zhu ZZ, Sparrow D, Hou L, Tarantini L, Bollati V, Litonjua AA et al (2011) Repetitive element hypomethylation in blood leukocyte DNA and cancer incidence, prevalence, and mortality in elderly individuals: the Normative Aging Study. Cancer Causes Control 22:437–447
Wu HC, Wang Q, Yang HI, Tsai WY, Chen CJ, Santella RM (2012) Global DNA methylation levels in white blood cells as a biomarker for hepatocellular carcinoma risk: a nested case-control study. Carcinogenesis 33:1340–1345
Stefanska B, Huang J, Bhattacharyya B, Suderman M, Hallett M, Han ZG et al (2011) Definition of the landscape of promoter DNA hypomethylation in liver cancer. Cancer Res 71:5891–5903
Kong LM, Liao CG, Chen L, Yang HS, Zhang SH, Zhang Z et al (2011) Promoter hypomethylation up-regulates CD147 expression through increasing Sp1 binding and associates with poor prognosis in human hepatocellular carcinoma. J Cell Mol Med 15:1415–1428
Ribieras S, Lefebvre O, Tomasetto C, Rio MC (2001) Mouse Trefoil factor genes: genomic organization, sequences and methylation analyses. Gene 266:67–75
Okada H, Kimura MT, Tan D, Fujiwara K, Igarashi J, Makuuchi M et al (2005) Frequent trefoil factor 3 (TFF3) overexpression and promoter hypomethylation in mouse and human hepatocellular carcinomas. Int J Oncol 26:369–377
Zhao W, Liu H, Liu W, Wu Y, Chen W, Jiang B et al (2006) Abnormal activation of the synuclein-gamma gene in hepatocellular carcinomas by epigenetic alteration. Int J Oncol 28:1081–1088
Pogribny IP, Rusyn I (2014) Role of epigenetic aberrations in the development and progression of human hepatocellular carcinoma. Cancer Lett 342:223–230
Song MA, Tiirikainen M, Kwee S, Okimoto G, Yu H, Wong LL (2013) Elucidating the landscape of aberrant DNA methylation in hepatocellular carcinoma. PLoS One 8:e55761
Chen T, Li E (2004) Structure and function of eukaryotic DNA methyltransferases. Curr Top Dev Biol 60:55–89
Goll MG, Bestor TH (2005) Eukaryotic cytosine methyltransferases. Annu Rev Biochem 74:481–514
Hermann A, Schmitt S, Jeltsch A (2003) The human Dnmt2 has residual DNA-(cytosine-C5) methyltransferase activity. J Biol Chem 278:31717–31721
Goll MG, Kirpekar F, Maggert KA, Yoder JA, Hsieh CL, Zhang X et al (2006) Methylation of tRNAAsp by the DNA methyltransferase homolog Dnmt2. Science 311:395–398
Robertson KD (2001) DNA methylation, methyltransferases, and cancer. Oncogene 20:3139–3155
Robertson KD, Uzvolgyi E, Liang G, Talmadge C, Sumegi J, Gonzales FA et al (1999) The human DNA methyltransferases (DNMTs) 1, 3a and 3b: coordinate mRNA expression in normal tissues and overexpression in tumors. Nucleic Acids Res 27:2291–2298
Kanai Y, Ushijima S, Hui AM, Ochiai A, Tsuda H, Sakamoto M et al (1997) The E-cadherin gene is silenced by CpG methylation in human hepatocellular carcinomas. Int J Cancer 71:355–359
Saito Y, Kanai Y, Sakamoto M, Saito H, Ishii H, Hirohashi S (2001) Expression of mRNA for DNA methyltransferases and methyl-CpG-binding proteins and DNA methylation status on CpG islands and pericentromeric satellite regions during human hepatocarcinogenesis. Hepatology 33:561–568
Choi MS, Shim YH, Hwa JY, Lee SK, Ro JY, Kim JS et al (2003) Expression of DNA methyltransferases in multistep hepatocarcinogenesis. Hum Pathol 34:11–17
Park HJ, Yu E, Shim YH (2006) DNA methyltransferase expression and DNA hypermethylation in human hepatocellular carcinoma. Cancer Lett 233:271–278
Saito Y, Kanai Y, Nakagawa T, Sakamoto M, Saito H, Ishii H et al (2003) Increased protein expression of DNA methyltransferase (DNMT) 1 is significantly correlated with the malignant potential and poor prognosis of human hepatocellular carcinomas. Int J Cancer 105:527–532
Oh BK, Kim H, Park HJ, Shim YH, Choi J, Park C et al (2007) DNA methyltransferase expression and DNA methylation in human hepatocellular carcinoma and their clinicopathological correlation. Int J Mol Med 20:65–73
Jung JK, Arora P, Pagano JS, Jang KL (2007) Expression of DNA methyltransferase 1 is activated by hepatitis B virus X protein via a regulatory circuit involving the p16INK4a-cyclin D1-CDK 4/6-pRb-E2F1 pathway. Cancer Res 67:5771–5778
Zheng DL, Zhang L, Cheng N, Xu X, Deng Q, Teng XM et al (2009) Epigenetic modification induced by hepatitis B virus X protein via interaction with de novo DNA methyltransferase DNMT3A. J Hepatol 50:377–387
Arora P, Kim EO, Jung JK, Jang KL (2008) Hepatitis C virus core protein downregulates E-cadherin expression via activation of DNA methyltransferase 1 and 3b. Cancer Lett 261:244–252
Kouzarides T (2007) Chromatin modifications and their function. Cell 128:693–705
Schneider R, Grosschedl R (2007) Dynamics and interplay of nuclear architecture, genome organization, and gene expression. Genes Dev 21:3027–3043
Creyghton MP, Cheng AW, Welstead GG, Kooistra T, Carey BW, Steine EJ et al (2010) Histone H3K27ac separates active from poised enhancers and predicts developmental state. Proc Natl Acad Sci U S A 107:21931–21936
He C, Xu J, Zhang J, Xie D, Ye H, Xiao Z et al (2012) High expression of trimethylated histone H3 lysine 4 is associated with poor prognosis in hepatocellular carcinoma. Hum Pathol 43:1425–1435
Cai MY, Hou JH, Rao HL, Luo RZ, Li M, Pei XQ et al (2011) High expression of H3K27me3 in human hepatocellular carcinomas correlates closely with vascular invasion and predicts worse prognosis in patients. Mol Med 17:12–20
Kondo Y, Shen L, Suzuki S, Kurokawa T, Masuko K, Tanaka Y et al (2007) Alterations of DNA methylation and histone modifications contribute to gene silencing in hepatocellular carcinomas. Hepatol Res 37:974–983
Yao JY, Zhang L, Zhang X, He ZY, Ma Y, Hui LJ et al (2010) H3K27 trimethylation is an early epigenetic event of p16INK4a silencing for regaining tumorigenesis in fusion reprogrammed hepatoma cells. J Biol Chem 285:18828–18837
Zhang C, Li H, Wang Y, Liu W, Zhang Q, Zhang T et al (2010) Epigenetic inactivation of the tumor suppressor gene RIZ1 in hepatocellular carcinoma involves both DNA methylation and histone modifications. J Hepatol 53:889–895
Sistayanarain A, Tsuneyama K, Zheng H, Takahashi H, Nomoto K, Cheng C et al (2006) Expression of Aurora-B kinase and phosphorylated histone H3 in hepatocellular carcinoma. Anticancer Res 26:3585–3593
Pote N, Alexandrov T, Le Faouder J, Laouirem S, Leger T, Mebarki M et al (2013) Imaging mass spectrometry reveals modified forms of histone H4 as new biomarkers of microvascular invasion in hepatocellular carcinomas. Hepatology 58:983–994
Sharma S, Kelly TK, Jones PA (2010) Epigenetics in cancer. Carcinogenesis 31:27–36
Hamamoto R, Furukawa Y, Morita M, Iimura Y, Silva FP, Li M et al (2004) SMYD3 encodes a histone methyltransferase involved in the proliferation of cancer cells. Nat Cell Biol 6:731–740
Wu LM, Yang Z, Zhou L, Zhang F, Xie HY, Feng XW et al (2010) Identification of histone deacetylase 3 as a biomarker for tumor recurrence following liver transplantation in HBV-associated hepatocellular carcinoma. PLoS One 5:e14460
Choi HN, Bae JS, Jamiyandorj U, Noh SJ, Park HS, Jang KY et al (2011) Expression and role of SIRT1 in hepatocellular carcinoma. Oncol Rep 26:503–510
Cheng AS, Lau SS, Chen Y, Kondo Y, Li MS, Feng H et al (2011) EZH2-mediated concordant repression of Wnt antagonists promotes beta-catenin-dependent hepatocarcinogenesis. Cancer Res 71:4028–4039
Bhaskara S, Knutson SK, Jiang G, Chandrasekharan MB, Wilson AJ, Zheng S et al (2010) Hdac3 is essential for the maintenance of chromatin structure and genome stability. Cancer Cell 18:436–447
Yang L, Ren J, He J, Chen LB (2009) Induction of SMYD3 by hepatitis B virus X gene in HepG2 cells. Zhonghua Gan ZangBingZa Zhi 17:297–300
Ambros V (2004) The functions of animal microRNAs. Nature 431:350–355
Bartel DP (2004) MicroRNAs: genomics, biogenesis, mechanism, and function. Cell 116:281–297
de Juan C, Iniesta P, Vega FJ, Peinado MA, Fernandez C, Caldes T et al (1998) Prognostic value of genomic damage in non-small-cell lung cancer. Br J Cancer 77:1971–1977
Saito Y, Hibino S, Saito H (2014) Alterations of epigenetics and microRNA in hepatocellular carcinoma. Hepatol Res 44:31–42
Valeri N, Vannini I, Fanini F, Calore F, Adair B, Fabbri M (2009) Epigenetics, miRNAs, and human cancer: a new chapter in human gene regulation. Mamm Genome 20:573–580
Calin GA, Sevignani C, Dumitru CD, Hyslop T, Noch E, Yendamuri S et al (2004) Human microRNA genes are frequently located at fragile sites and genomic regions involved in cancers. Proc Natl Acad Sci U S A 101:2999–3004
Negrini M, Gramantieri L, Sabbioni S, Croce CM (2011) microRNA involvement in hepatocellular carcinoma. Anticancer Agents Med Chem 11:500–521
Callegari E, Elamin BK, Sabbioni S, Gramantieri L, Negrini M (2013) Role of microRNAs in hepatocellular carcinoma: a clinical perspective. Onco Targets Ther 6:1167–1178
Fornari F, Gramantieri L, Ferracin M, Veronese A, Sabbioni S, Calin GA et al (2008) MiR-221 controls CDKN1C/p57 and CDKN1B/p27 expression in human hepatocellular carcinoma. Oncogene 27:5651–5661
Garofalo M, Di Leva G, Romano G, Nuovo G, Suh SS, Ngankeu A et al (2009) miR-221&222 regulate TRAIL resistance and enhance tumorigenicity through PTEN and TIMP3 downregulation. Cancer Cell 16:498–509
Ko K, Peng H, Tang H, Cho ME, Peng J, Aller MA, Yang P (2012) Recent advances of miRNAinvolvement in hepatocellular carcinoma and cholangiocarcinoma. Open J Intern Med 2:135–162
Ji J, Shi J, Budhu A, Yu Z, Forgues M, Roessler S et al (2009) MicroRNA expression, survival, and response to interferon in liver cancer. N Engl J Med 361:1437–1447
Viswanathan SR, Powers JT, Einhorn W, Hoshida Y, Ng TL, Toffanin S et al (2009) Lin28 promotes transformation and is associated with advanced human malignancies. Nat Genet 41:843–848
Fornari F, Milazzo M, Chieco P, Negrini M, Calin GA, Grazi GL et al (2010) MiR-199a-3p regulates mTOR and c-Met to influence the doxorubicin sensitivity of human hepatocarcinoma cells. Cancer Res 70:5184–5193
Meng F, Henson R, Wehbe-Janek H, Ghoshal K, Jacob ST, Patel T (2007) MicroRNA-21 regulates expression of the PTEN tumor suppressor gene in human hepatocellular cancer. Gastroenterology 133:647–658
Han ZB, Chen HY, Fan JW, Wu JY, Tang HM, Peng ZH (2012) Up-regulation of microRNA-155 promotes cancer cell invasion and predicts poor survival of hepatocellular carcinoma following liver transplantation. J Cancer Res Clin Oncol 138:153–161
Chen L, Jiang M, Yuan W, Tang H (2012) miR-17-5p as a novel prognostic marker for hepatocellular carcinoma. J Invest Surg 25:156–161
Elyakim E, Sitbon E, Faerman A, Tabak S, Montia E, Belanis L et al (2010) hsa-miR-191 is a candidate oncogene target for hepatocellular carcinoma therapy. Cancer Res 70:8077–8087
Borel F, Konstantinova P, Jansen PL (2012) Diagnostic and therapeutic potential of miRNA signatures in patients with hepatocellular carcinoma. J Hepatol 56:1371–1383
Liu WH, Yeh SH, Chen PJ (1809) Role of microRNAs in hepatitis B virus replication and pathogenesis. Biochim Biophys Acta 2011:678–685
Zhang X, Zhang E, Ma Z, Pei R, Jiang M, Schlaak JF et al (2011) Modulation of hepatitis B virus replication and hepatocyte differentiation by MicroRNA-1. Hepatology 53:1476–1485
Wang Z, Lin S, Li JJ, Xu Z, Yao H, Zhu X et al (2011) MYC protein inhibits transcription of the microRNA cluster MC-let-7a-1–let-7d via noncanonical E-box. J Biol Chem 286:39703–39714
Au SL, Wong CC, Lee JM, Fan DN, Tsang FH, Ng IO et al (2012) Enhancer of zeste homolog 2 epigenetically silences multiple tumor suppressor microRNAs to promote liver cancer metastasis. Hepatology 56:622–631
Peng X, Li Y, Walters KA, Rosenzweig ER, Lederer SL, Aicher LD et al (2009) Computational identification of hepatitis C virus associated microRNA-mRNA regulatory modules in human livers. BMC Genomics 10:373
Hou W, Tian Q, Zheng J, Bonkovsky HL (2010) MicroRNA-196 represses Bach1 protein and hepatitis C virus gene expression in human hepatoma cells expressing hepatitis C viral proteins. Hepatology 51:1494–1504
Shen J, Wang S, Zhang YJ, Kappil MA, Chen WH, Kibriya MG et al (2012) Genome-wide aberrant DNA methylation of microRNA host genes in hepatocellular carcinoma. Epigenetics 7:1230–1237
Lawrie CH, Gal S, Dunlop HM, Pushkaran B, Liggins AP, Pulford K et al (2008) Detection of elevated levels of tumour-associated microRNAs in serum of patients with diffuse large B-cell lymphoma. Br J Haematol 141:672–675
Mitchell PS, Parkin RK, Kroh EM, Fritz BR, Wyman SK, Pogosova-Agadjanyan EL et al (2008) Circulating microRNAs as stable blood-based markers for cancer detection. Proc Natl Acad Sci U S A 105:10513–10518
Chen C-J (2013) Early diagnosis of hepatocellular carcinoma by multiple microRNAs: validity, efficacy, and cost-effectiveness. J Clin Oncol 29:4745–4747
Zhou J, Yu L, Gao X, Hu J, Wang J, Dai Z et al (2011) Plasma microRNA panel to diagnose hepatitis B virus-related hepatocellular carcinoma. J Clin Oncol 29:4781–4788
Li LM, Hu ZB, Zhou ZX, Chen X, Liu FY, Zhang JF et al (2010) Serum microRNA profiles serve as novel biomarkers for HBV infection and diagnosis of HBV-positive hepatocarcinoma. Cancer Res 70:9798–9807
Shen J, Wang A, Wang Q, Gurvich I, Siegel AB, Remotti H et al (2013) Exploration of genome-wide circulating microRNA in hepatocellular carcinoma: MiR-483-5p as a potential biomarker. Cancer Epidemiol Biomarkers Prev 22:2364–2373
Zhang SG, Wang X, Yuan Q, Yan Q, Ye H, Che Y, Lin Y, Zhang J, Liu P (2013) Serum miR-483-5p as a potential biomarker to detect hepatocellular carcinoma. Hepatol Int 7:199–207
Abdalla MA, Haj-Ahmad Y (2012) Promising urinary protein biomarkers for the early detection of hepatocellular carcinoma among high-risk hepatitis C virus egyptian patients. J Cancer 3:390–403
Cortessis VK, Thomas DC, Levine AJ, Breton CV, Mack TM, Siegmund KD et al (2012) Environmental epigenetics: prospects for studying epigenetic mediation of exposure-response relationships. Hum Genet 131:1565–1589
Pennisi E (2005) Environmental epigenomics meeting. Supplements restore gene function via methylation. Science 310:1761
Acknowledgments
I sincerely thank Dr. Regina M. Santella for her invaluable comments and suggestions; Dr. Chien-Jen Chen for his encouragement and long-term cooperation and Dr. Jing Shen for his bibliographic assistance.
Author information
Authors and Affiliations
Corresponding author
Editor information
Editors and Affiliations
Rights and permissions
Copyright information
© 2015 Springer Science+Business Media New York
About this protocol
Cite this protocol
Zhang, Y. (2015). Detection of Epigenetic Aberrations in the Development of Hepatocellular Carcinoma. In: Verma, M. (eds) Cancer Epigenetics. Methods in Molecular Biology, vol 1238. Humana Press, New York, NY. https://doi.org/10.1007/978-1-4939-1804-1_37
Download citation
DOI: https://doi.org/10.1007/978-1-4939-1804-1_37
Published:
Publisher Name: Humana Press, New York, NY
Print ISBN: 978-1-4939-1803-4
Online ISBN: 978-1-4939-1804-1
eBook Packages: Springer Protocols