Abstract
Notch is modified by multiple types of posttranslational modifications, most of which are known to affect Notch function. The extracellular domain (ECD) is modified with N-glycosylation and at least three types of O-glycosylation (O-fucose, O-glucose, and O-GlcNAc), while the intracellular domain is hydroxylated, phosphorylated, and ubiquitinated. In order to analyze the structure and function of the O-glycans decorating the ECD, we have developed semiquantitative mass spectral methods for identifying modifications at individual sites on Notch that are generally applicable to most posttranslational modifications. Here we describe the expression and purification of Notch ECD fragments, digestion of the fragments with proteases to prepare for mass spectral analysis, and identification of peptides modified with O-glycans using mass spectrometry.
Access this chapter
Tax calculation will be finalised at checkout
Purchases are for personal use only
References
Kopan R, Ilagan MX (2009) The canonical Notch signaling pathway: unfolding the activation mechanism. Cell 137:216–233
Rana NA, Haltiwanger RS (2011) Fringe benefits: functional and structural impacts of O-glycosylation on the extracellular domain of Notch receptors. Curr Opin Struct Biol 21: 583–589
Moloney DJ, Shair LH, Lu FM et al (2000) Mammalian Notch1 is modified with two unusual forms of O-linked glycosylation found on epidermal growth factor-like modules. J Biol Chem 275:9604–9611
Shao L, Moloney DJ, Haltiwanger RS (2003) Fringe modifies O-fucose on mouse Notch1 at epidermal growth factor-like repeats within the ligand-binding site and the Abruptex region. J Biol Chem 278:7775–7782
Matsuura A, Ito M, Sakaidani Y et al (2008) O-linked N-acetylglucosamine is present on the extracellular domain of notch receptors. J Biol Chem 283:35486–35495
Rana NA, Nita-Lazar A, Takeuchi H et al (2011) O-glucose trisaccharide is present at high but variable stoichiometry at multiple sites on mouse Notch1. J Biol Chem 286: 31623–31637
Foltz DR, Santiago MC, Berechid BE et al (2002) Glycogen synthase kinase-3beta modulates notch signaling and stability. Curr Biol 12:1006–1011
Gupta-Rossi N, Six E, LeBail O et al (2004) Monoubiquitination and endocytosis direct gamma-secretase cleavage of activated Notch receptor. J Cell Biol 166:73–83
Coleman ML, McDonough MA, Hewitson KS et al (2007) Asparaginyl hydroxylation of the Notch ankyrin repeat domain by factor inhibiting hypoxia-inducible factor. J Biol Chem 282:24027–24038
Campbell ID, Bork P (1993) Epidermal Growth Factor-like Modules. Curr Opin Struct Biol 3:385–392
Sakaidani Y, Nomura T, Matsuura A et al (2011) O-linked-N-acetylglucosamine on extracellular protein domains mediates epithelial cell-matrix interactions. Nat Commun 2:583
Acar M, Jafar-Nejad H, Takeuchi H et al (2008) Rumi is a CAP10 domain glycosyltransferase that modifies Notch and is required for Notch signaling. Cell 132: 247–258
Sethi MK, Buettner FF, Ashikov A et al (2012) Molecular cloning of a xylosyltransferase that transfers the second xylose to O-glucosylated epidermal growth factor repeats of notch. J Biol Chem 287:2739–2748
Sethi MK, Buettner FF, Krylov VB et al (2010) Identification of glycosyltransferase 8 family members as xylosyltransferases acting on O-glucosylated notch epidermal growth factor repeats. J Biol Chem 285:1582–1586
Wang Y, Shao L, Shi S et al (2001) Modification of epidermal growth factor-like repeats with O-fucose. Molecular cloning of a novel GDP-fucose protein O-fucosyltransferase J Biol Chem 276:40338–40345
Moloney DJ, Panin VM, Johnston SH et al (2000) Fringe is a glycosyltransferase that modifies Notch. Nature 406:369–375
Sakaidani Y, Ichiyanagi N, Saito C et al (2012) O-linked-N-acetylglucosamine modification of mammalian Notch receptors by an atypical O-GlcNAc transferase Eogt1. Biochem Biophys Res Commun 419:14–19
Shi S, Stanley P (2003) Protein O-fucosyltransferase 1 is an essential component of Notch signaling pathways. Proc Natl Acad Sci USA 100:5234–5239
Fernandez-Valdivia R, Takeuchi H, Samarghandi A et al (2011) Regulation of mammalian Notch signaling and embryonic development by the protein O-glucosyltransferase Rumi. Development 138:1925–1934
Lee TV, Sethi MK, Leonardi J et al (2013) Negative regulation of notch signaling by xylose. PLoS Genet 9:e1003547
Panin VM, Papayannopoulos V, Wilson R et al (1997) Fringe modulates Notch-ligand interactions. Nature 387:908–912
Yamamoto S, Charng W-L, Rana NA et al (2012) A mutation in EGF repeat-8 of Notch discriminates between Serrate/Jagged and Delta family ligands. Science 338:1229–1232
Liebler DC (2002) Introduction to proteomics tools for the new biology. Humana Press, Totowa
Unwin RD, Evans CA, Whetton AD (2006) Relative quantification in proteomics: new approaches for biochemistry. Trends Biochem Sci 31:473–484
Acknowledgements
We would like to thank Haltiwanger lab members for helpful comments. Primary work introduced here was supported by NIH grants GM061126 and CA12307101.
Author information
Authors and Affiliations
Corresponding author
Editor information
Editors and Affiliations
Rights and permissions
Copyright information
© 2014 Springer Science+Business Media New York
About this protocol
Cite this protocol
Kakuda, S., Haltiwanger, R.S. (2014). Analyzing the Posttranslational Modification Status of Notch Using Mass Spectrometry. In: Bellen, H., Yamamoto, S. (eds) Notch Signaling. Methods in Molecular Biology, vol 1187. Humana Press, New York, NY. https://doi.org/10.1007/978-1-4939-1139-4_16
Download citation
DOI: https://doi.org/10.1007/978-1-4939-1139-4_16
Published:
Publisher Name: Humana Press, New York, NY
Print ISBN: 978-1-4939-1138-7
Online ISBN: 978-1-4939-1139-4
eBook Packages: Springer Protocols