Abstract
This chapter outlines methods for the production of dengue virus (DENV) reporter virus particles (RVPs) and their use in assays that measure antibody-mediated neutralization and enhancement of DENV infection. RVPs are pseudo-infectious virions produced by complementation of a self-replicating flavivirus replicon with the DENV structural genes in trans. RVPs harvested from transfected cells are capable of only a single round of infection and encapsidate replicon RNA that encodes a reporter gene used to enumerate infected cells. RVPs may be produced using the structural genes of different DENV serotypes, genotypes, and mutants by changing plasmids used for complementation. Further modifications are possible including generating RVPs with varying levels of uncleaved prM protein, which resemble either the immature or mature form of the virus. Neutralization potency is measured by incubating RVPs with serial dilutions of antibody, followed by infection of target cells that express DENV attachment factors. Enhancement of infection is measured similarly using Fc receptor-expressing cells capable of internalizing antibody-virus complexes.
Access this chapter
Tax calculation will be finalised at checkout
Purchases are for personal use only
References
Gubler DJ, Kuno G, Markoff L (2007) Flaviviruses. In: Knipe DM, Howley PM (eds) Fields virology. Lippincott-Raven, Philadelphia, pp 1154–1227
Monath TP (1994) Dengue: the risk to developed and developing countries. Proc Natl Acad Sci U S A 91:2395–2400
Halstead SB (2007) Dengue. Lancet 370: 1644–1652
Rico-Hesse R (1990) Molecular evolution and distribution of dengue viruses type 1 and 2 in nature. Virology 174:479–493
Holmes EC, Twiddy SS (2003) The origin, emergence and evolutionary genetics of dengue virus. Infect Genet Evol 3:19–28
Mukhopadhyay S, Kuhn RJ, Rossmann MG (2005) A structural perspective of the flavivirus life cycle. Nat Rev Microbiol 3:13–22
Lindenbach BD, Rice CM (2003) Molecular biology of flaviviruses. Adv Virus Res 59:23–61
Khromykh AA, Westaway EG (1997) Subgenomic replicons of the flavivirus Kunjin: construction and applications. J Virol 71: 1497–1505
Khromykh AA (2000) Replicon-based vectors of positive strand RNA viruses. Curr Opin Mol Therapeut 2:555–569
Hoenninger VM, Rouha H, Orlinger KK et al (2008) Analysis of the effects of alterations in the tick-borne encephalitis virus 3′-noncoding region on translation and RNA replication using reporter replicons. Virology 377:419–430
Chen Y-L, Yin Z, Duraiswamy J et al (2010) Inhibition of dengue virus RNA synthesis by an adenosine nucleoside. Antimicrob Agents Chemother 54(7):2932–2939
Suzuki R, Fayzulin R, Frolov I et al (2008) Identification of mutated cyclization sequences that permit efficient replication of West Nile virus genomes: use in safer propagation of a novel vaccine candidate. J Virol 82(14): 6942–6951
Liu WJ, Sedlak PL, Kondratieva N et al (2002) Complementation analysis of the flavivirus Kunjin NS3 and NS5 proteins defines the minimal regions essential for formation of a replication complex and shows a requirement of NS3 in cis for virus assembly. J Virol 76: 10766–10775
Khromykh AA, Meka H, Guyatt KJ et al (2001) Essential role of cyclization sequences in flavivirus RNA replication. J Virol 75: 6719–6728
Manzano M, Reichert ED, Polo S et al (2011) Identification of cis-acting elements in the 3′-untranslated region of the dengue virus type 2 RNA that modulate translation and replication. J Biol Chem 286: 22521–22534
Tilgner M, Deas TS, Shi P-Y (2005) The flavivirus-conserved penta-nucleotide in the 3′ stem-loop of the West Nile virus genome requires a specific sequence and structure for RNA synthesis, but not for viral translation. Virology 331:375–386
Holden KL, Stein DA, Pierson TC et al (2006) Inhibition of dengue virus translation and RNA synthesis by a morpholino oligomer targeted to the top of the terminal 3′ stem-loop structure. Virology 344:439–452
Chang DC, Liu WJ, Anraku I et al (2008) Single-round infectious particles enhance immunogenicity of a DNA vaccine against West Nile virus. Nat Biotechnol 26:571–577
Harvey TJ, Anraku I, Linedale R et al (2003) Kunjin virus replicon vectors for human immunodeficiency virus vaccine development. J Virol 77:7796–7803
Suzuki R, Winkelmann ER, Mason PW (2009) Construction and characterization of a single-cycle chimeric flavivirus vaccine candidate that protects mice against lethal challenge with dengue virus type 2. J Virol 83(4): 1870–1880
Patkar CG, Larsen M, Owston M et al (2009) Identification of inhibitors of yellow fever virus replication using a replicon-based high-throughput assay. Antimicrob Agents Chemother 53:4103–4114
Puig-Basagoiti F, Qing M, Dong H et al (2009) Identification and characterization of inhibitors of West Nile virus. Antiviral Res 83:71–79
Ishikawa T, Widman DG, Bourne N et al (2008) Construction and evaluation of a chimeric pseudoinfectious virus vaccine to prevent Japanese encephalitis. Vaccine 26:2772–2781
Lo MK, Tilgner M, Shi PY (2003) Potential high-throughput assay for screening inhibitors of West Nile virus replication. J Virol 77(23): 12901–12906
Khromykh AA, Varnavski AN, Westaway EG (1998) Encapsidation of the flavivirus kunjin replicon RNA by using a complementation system providing Kunjin virus structural proteins in trans. J Virol 72:5967–5977
Pierson TC, Sánchez MD, Puffer BA et al (2006) A rapid and quantitative assay for measuring antibody-mediated neutralization of West Nile virus infection. Virology 346:53–65
Jones CT, Patkar CG, Kuhn RJ (2005) Construction and applications of yellow fever virus replicons. Virology 331:247–259
Scholle F, Girard YA, Zhao Q et al (2004) trans-Packaged West Nile virus-like particles: infectious properties in vitro and in infected mosquito vectors. J Virol 78:11605–11614
Puig-Basagoiti F, Deas TS, Ren P et al (2005) High-throughput assays using a luciferase-expressing replicon, virus-like particles, and full-length virus for West Nile virus drug discovery. Antimicrob Agents Chemother 49: 4980–4988
Ansarah-Sobrinho C, Nelson S, Jost CA et al (2008) Temperature-dependent production of pseudoinfectious dengue reporter virus particles by complementation. Virology 381:67–74
Harvey TJ, Liu WJ, Wang XJ et al (2004) Tetracycline-inducible packaging cell line for production of flavivirus replicon particles. J Virol 78:531–538
Mattia K, Puffer BA, Williams KL et al (2011) Dengue reporter virus particles for measuring neutralizing antibodies against each of the four dengue serotypes. PloS One 6:e27252
Dowd KA, Jost CA, Durbin AP et al (2011) A dynamic landscape for antibody binding modulates antibody-mediated neutralization of West Nile virus. PLoS Pathog 7:e1002111
Varnavski AN, Young PR, Khromykh AA (2000) Stable high-level expression of heterologous genes in vitro and in vivo by noncytopathic DNA-based Kunjin virus replicon vectors. J Virol 74:4394–4403
Pierson TC, Diamond MS, Ahmed AA et al (2005) An infectious West Nile virus that expresses a GFP reporter gene. Virology 334:28–40
Yamshchikov V, Mishin V, Cominelli F (2001) A new strategy in design of + RNA virus infectious clones enabling their stable propagation in E. coli. Virology 281:272–280
Mishin VP, Cominelli F, Yamshchikov VF (2001) A “minimal” approach in design of flavivirus infectious DNA. Virus Res 81: 113–123
Varnavski AN, Khromykh AA (1999) Noncytopathic flavivirus replicon RNA-based system for expression and delivery of heterologous genes. Virology 255:366–375
Davis CW, Nguyen H-Y, Hanna SL et al (2006) West Nile virus discriminates between DC-SIGN and DC-SIGNR for cellular attachment and infection. J Virol 80:1290–1301
Qing M, Liu W, Yuan Z et al (2010) A high-throughput assay using dengue-1 virus-like particles for drug discovery. Antiviral Res 86:163–171
Sukupolvi-Petty S, Austin SK, Engle M et al (2010) Structure and function analysis of therapeutic monoclonal antibodies against dengue virus type 2. J Virol 84:9227–9239
Nelson S, Poddar S, Lin T-Y et al (2009) Protonation of individual histidine residues is not required for the pH-dependent entry of west nile virus: evaluation of the “histidine switch” hypothesis. J Virol 83:12631–12635
Nelson S, Jost CA, Xu Q et al (2008) Maturation of West Nile virus modulates sensitivity to antibody-mediated neutralization. PLoS Pathog 4:e1000060
Pierson TC, Diamond MS (2012) Degrees of maturity: the complex structure and biology of flaviviruses. Curr Opin Virol 2:168–175
Kuhn RJ, Zhang W, Rossmann MG et al (2002) Structure of dengue virus: implications for flavivirus organization, maturation, and fusion. Cell 108:717–725
Yu IM, Zhang W, Holdaway HA et al (2008) Structure of the immature dengue virus at low pH primes proteolytic maturation. Science 319:1834–1837
Gollins SW, Porterfield JS (1986) The uncoating and infectivity of the flavivirus West Nile on interaction with cells: effects of pH and ammonium chloride. J Gen Virol 67(Pt 9): 1941–1950
Cherrier MV, Kaufmann B, Nybakken GE et al (2009) Structural basis for the preferential recognition of immature flaviviruses by a fusion-loop antibody. EMBO J 28:3269–3276
Lundholt BK, Scudder KM, Pagliaro L (2003) A simple technique for reducing edge effect in cell-based assays. J Biomol Screen 8: 566–570
Pierson TC, Xu Q, Nelson S et al (2007) The stoichiometry of antibody-mediated neutralization and enhancement of West Nile virus infection. Cell Host Microbe 1:135–145
Klasse PJ, Sattentau QJ (2001) Mechanisms of virus neutralization by antibody. Curr Top Microbiol Immunol 260:87–108
Wang P-G, Kudelko M, Lo J et al (2009) Efficient assembly and secretion of recombinant subviral particles of the four dengue serotypes using native prM and E proteins. PloS One 4:e8325
Halstead SB (2003) Neutralization and antibody-dependent enhancement of dengue viruses. Adv Virus Res 60:421–467
Morens DM, Halstead SB, Marchette NJ (1987) Profiles of antibody-dependent enhancement of dengue virus type 2 infection. Microb Pathog 3:231–237
Muñoz-Jordan JL, Sánchez-Burgos GG, Laurent-Rolle M et al (2003) Inhibition of interferon signaling by dengue virus. Proc Natl Acad Sci U S A 100:14333–14338
Lok S-M, Kostyuchenko V, Nybakken GE et al (2008) Binding of a neutralizing antibody to dengue virus alters the arrangement of surface glycoproteins. Nat Struct Mol Biol 15: 312–317
Author information
Authors and Affiliations
Editor information
Editors and Affiliations
Rights and permissions
Copyright information
© 2014 Springer Science+Business Media, LLC
About this protocol
Cite this protocol
Mukherjee, S., Pierson, T.C., Dowd, K.A. (2014). Pseudo-infectious Reporter Virus Particles for Measuring Antibody-Mediated Neutralization and Enhancement of Dengue Virus Infection. In: Padmanabhan, R., Vasudevan, S. (eds) Dengue. Methods in Molecular Biology, vol 1138. Humana Press, New York, NY. https://doi.org/10.1007/978-1-4939-0348-1_6
Download citation
DOI: https://doi.org/10.1007/978-1-4939-0348-1_6
Published:
Publisher Name: Humana Press, New York, NY
Print ISBN: 978-1-4939-0347-4
Online ISBN: 978-1-4939-0348-1
eBook Packages: Springer Protocols