Abstract
Knowledge of membrane dynamics is crucial since it allows us to understand membrane function. Fluorescence recovery after photobleaching (FRAP) is a widely used technique to monitor diffusion of lipids and proteins in biological membranes. We outline here general aspects of FRAP, followed by a step-by-step guide to carry out FRAP measurements for exploring diffusion of fluorescently labeled lipids and proteins in membranes of attached cells and membranes of Candida albicans. In this process, we have provided detailed hands-on tips, judicious use of which would ensure reliability and quality of acquired FRAP data and associated analysis.
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References
Edidin M (1994) Fluorescence photobleaching and recovery, FPR, in the analysis of membrane structure and dynamics. In: Damjanovich S, Edidin M, Szöllõsi J, Trón L (eds) Mobility and proximity in biological membranes. CRC, Boca Raton, pp 109–135
Lippincott-Schwartz J, Snapp E, Kenworthy A (2001) Studying protein dynamics in living cells. Nat Rev Mol Cell Biol 2:444–456
Kenworthy AK (2007) Fluorescence recovery after photobleaching studies of lipid rafts. In: McIntosh TJ (ed) Lipid Rafts, Methods in molecular biology, vol 398. Humana, Totowa, pp 179–192
Carisey A, Stroud M, Tsang R, Ballestrem C (2011) Fluorescence recovery after photobleaching. In: Wells CM, Parsons M (eds) Cell migration: developmental methods and protocols, Methods in molecular biology, vol 769. Humana, New York, pp 387–402
Jafurulla M, Chattopadhyay A (2015) Novel insights in membrane biology utilizing fluorescence recovery after photobleaching. Adv Exp Med Biol 842:27–40
Sarkar P, Chattopadhyay A (2019) Exploring membrane organization at varying spatiotemporal resolutions utilizing fluorescence-based approaches: implications in membrane biology. Phys Chem Chem Phys 21:11554–11563
Lippincott-Schwartz J, Snapp EL, Phair RD (2018) The development and enhancement of FRAP as a key tool for investigating protein dynamics. Biophys J 115:1146–1155
Poo M, Cone RA (1974) Lateral diffusion of rhodopsin in the photoreceptor membrane. Nature 247:438–441
Liebman PA, Entine G (1974) Lateral diffusion of visual pigment in photoreceptor disk membranes. Science 185:457–459
Peters R, Peters J, Tews KH, Bähr W (1974) A microfluorimetric study of translational diffusion in erythrocyte membranes. Biochim Biophys Acta 367:282–294
Axelrod D, Koppel DE, Schlessinger J, Elson E, Webb WW (1976) Mobility measurement by analysis of fluorescence photobleaching recovery kinetics. Biophys J 16:1055–1069
Jacobson K, Derzko Z, Wu E-S, Hou Y, Poste G (1976) Measurement of the lateral mobility of cell surface components in single, living cells by fluorescence recovery after photobleaching. J Supramol Struct 5:565(417)–576(428)
Chalfie M, Tu Y, Euskirchen G, Ward WW, Prasher DC (1994) Green fluorescent protein as a marker for gene expression. Science 263:802–805
Reits EAJ, Neefjes JJ (2001) From fixed to FRAP: measuring protein mobility and activity in living cells. Nat Cell Biol 3:E145–E147
Lagerholm BC, Weinreb GE, Jacobson K, Thompson NL (2005) Detecting microdomains in intact cell membranes. Annu Rev Phys Chem 56:309–336
Valdez-Taubas J, Pelham HRB (2003) Slow diffusion of proteins in the yeast plasma membrane allows polarity to be maintained by endocytic cycling. Curr Biol 13:1636–1640
Ganguly S, Pucadyil TJ, Chattopadhyay A (2008) Actin cytoskeleton-dependent dynamics of the human serotonin1A receptor correlates with receptor signaling. Biophys J 95:451–463
Tsien RY (1998) The green fluorescent protein. Annu Rev Biochem 67:509–544
White J, Stelzer E (1999) Photobleaching GFP reveals protein dynamics inside live cells. Trends Cell Biol 9:61–65
Lippincott-Schwartz J, Patterson GH (2003) Development and use of fluorescent protein markers in living cells. Science 300:87–91
Haldar S, Chattopadhyay A (2009) Green fluorescent protein: the molecular lantern that illuminates the cellular interior. J Biosci 34:169–172
Sarkar P, Chattopadhyay A (2018) GFP fluorescence: a few lesser-known nuggets that make it work. J Biosci 43:421–430
Fucile S, Palma E, Martínez-Torres A, Miledi R, Eusebi F (2002) The single-channel properties of human acetylcholine α7 receptors are altered by fusing α7 to the green fluorescent protein. Proc Natl Acad Sci USA 99:3956–3961
Saffman PG, Delbrück M (1975) Brownian motion in biological membranes. Proc Natl Acad Sci USA 72:3111–3113
Maekawa M, Fairn GD (2014) Molecular probes to visualize the location, organization and dynamics of lipids. J Cell Sci 127:4801–4812
Klymchenko AS, Kreder R (2014) Fluorescent probes for lipid rafts: from model membranes to living cells. Chem Biol 21:97–113
Klausner RD, Wolf DE (1980) Selectivity of fluorescent lipid analogues for lipid domains. Biochemistry 19:6199–6203
Spink CH, Yeager MD, Feigenson GW (1990) Partitioning behavior of indocarbocyanine probes between coexisting gel and fluid phases in model membranes. Biochim Biophys Acta 1023:25–33
Kalipatnapu S, Chattopadhyay A (2004) A GFP fluorescence-based approach to determine detergent insolubility of the human serotonin1A receptor. FEBS Lett 576:455–460
Baumgart T, Hunt G, Farkas ER, Webb WW, Feigenson GW (2007) Fluorescence probe partitioning between Lo/Ld phases in lipid membranes. Biochim Biophys Acta 1768:2182–2194
Mukherjee S, Soe TT, Maxfield FR (1999) Endocytic sorting of lipid analogues differing solely in the chemistry of their hydrophobic tails. J Cell Biol 144:1271–1284
Pucadyil TJ, Chattopadhyay A (2006) Effect of cholesterol on lateral diffusion of fluorescent lipid probes in native hippocampal membranes. Chem Phys Lipids 143:11–21
Mukhopadhyay K, Prasad T, Saini P, Pucadyil TJ, Chattopadhyay A, Prasad R (2004) Membrane sphingolipid-ergosterol interactions are important determinants of multidrug resistance in Candida albicans. Antimicrob Agents Chemother 48:1778–1787
Soumpasis DM (1983) Theoretical analysis of fluorescence photobleaching recovery experiments. Biophys J 41:95–97
Lippincott-Schwartz J, Presley JF, Zaal KJM, Hirschberg K, Miller CD, Ellenberg J (1999) Monitoring the dynamics and mobility of membrane proteins tagged with green fluorescent protein. Methods Cell Biol 58:261–281
Yang F, Moss LG, Phillips GN Jr (1996) The molecular structure of green fluorescent protein. Nat Biotechnol 14:1246–1251
Prendergast FG (1999) Biophysics of the green fluorescent protein. Methods Cell Biol 58:1–18
Haldar S, Chattopadhyay A (2007) Dipolar relaxation within the protein matrix of the green fluorescent protein: a red edge excitation shift study. J Phys Chem B 111:14436–14439
Weiss M (2004) Challenges and artifacts in quantitative photobleaching experiments. Traffic 5:662–671
Dickson RM, Cubitt AB, Tsien RY, Moerner WE (1997) On/off blinking and switching behaviour of single molecules of green fluorescent protein. Nature 388:355–358
McAnaney TB, Zeng W, Doe CFE, Bhanji N, Wakelin S, Pearson DS, Abbyad P, Shi X, Boxer SG, Bagshaw CR (2005) Protonation, photobleaching, and photoactivation of yellow fluorescent protein (YFP 10C): a unifying mechanism. Biochemistry 44:5510–5524
Lippincott-Schwartz J, Altan-Bonnet N, Patterson GH (2003) Photobleaching and photoactivation: following protein dynamics in living cells. Nat Cell Biol 5:S7–S14
Snapp EL, Altan N, Lippincott-Schwartz J (2003) Measuring protein mobility by photobleaching GFP chimeras in living cells. Curr Prot Cell Biol 21(1):1–21.1.24
Khandelwal NK, Sarkar P, Gaur NA, Chattopadhyay A, Prasad R (2018) Phosphatidylserine decarboxylase governs plasma membrane fluidity and impacts drug susceptibilities of Candida albicans cells. Biochim Biophys Acta 1860:2308–2319
Pucadyil TJ, Chattopadhyay A (2006) Confocal fluorescence recovery after photobleaching of green fluorescent protein in solution. J Fluoresc 16:87–94
Axelrod D (1977) Cell surface heating during fluorescence photobleaching recovery experiments. Biophys J 18:129–131
De Los SC, Chang C-W, Mycek M-A, Cardullo RA (2015) FRAP, FLIM, and FRET: detection and analysis of cellular dynamics on a molecular scale using fluorescence microscopy. Mol Reprod Dev 82:587–604
Koppel DE, Sheetz MP, Schindler M (1980) Lateral diffusion in biological membranes. A normal-mode analysis of diffusion on a spherical surface. Biophys J 30:187–192
Pucadyil TJ, Chattopadhyay A (2007) Cholesterol depletion induces dynamic confinement of the G-protein coupled serotonin1A receptor in the plasma membrane of living cells. Biochim Biophys Acta 1768:655–668
Ganguly S, Chattopadhyay A (2010) Cholesterol depletion mimics the effect of cytoskeletal destabilization on membrane dynamics of the serotonin1A receptor: a zFCS study. Biophys J 99:1397–1407
Kreutzberger AJB, Ji M, Aaron J, Mihaljević L, Urban S (2019) Rhomboid distorts lipids to break the viscosity-imposed speed limit of membrane diffusion. Science 363:eaao0076
Feder TJ, Brust-Mascher I, Slattery JP, Baird B, Webb WW (1996) Constrained diffusion or immobile fraction on cell surfaces: a new interpretation. Biophys J 70:2767–2773
Acknowledgments
A.C. gratefully acknowledges support from SERB Distinguished Fellowship (Department of Science and Technology, Govt. of India). P.S. thanks the Council of Scientific and Industrial Research for the award of a Shyama Prasad Mukherjee Fellowship. A.C. is a Distinguished Visiting Professor at the Indian Institute of Technology Bombay (Mumbai), Adjunct Professor at the RMIT University (Melbourne, Australia), Tata Institute of Fundamental Research (Mumbai), and Indian Institute of Science Education and Research (Kolkata), and an Honorary Professor at the Jawaharlal Nehru Centre for Advanced Scientific Research (Bengaluru). We thank members of the Chattopadhyay laboratory for their comments and discussions.
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Sarkar, P., Chattopadhyay, A. (2020). Exploring Membrane Lipid and Protein Diffusion by FRAP. In: Prasad, R., Singh, A. (eds) Analysis of Membrane Lipids. Springer Protocols Handbooks. Springer, New York, NY. https://doi.org/10.1007/978-1-0716-0631-5_8
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DOI: https://doi.org/10.1007/978-1-0716-0631-5_8
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