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Screening for Components/Compounds with Anti-Rotavirus Activity: Detection of Interaction Between Viral Spike Proteins and Glycans

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Lectin Purification and Analysis

Part of the book series: Methods in Molecular Biology ((MIMB,volume 2132))

Abstract

Rotaviruses are the major etiologic agents of acute gastroenteritis. Viral attachment to the cell surface is crucial to initiate infection. The VP8 domain, the trypsinized cleavage fragment of the outermost spike protein VP4 of rotavirus, has a galectin-like structure required for binding to the cell surface. We used the evanescent-field fluorescence-assisted assay to understand the complex mechanism underlying the virus-glycan/glycoprotein interaction. Besides, we have described virus infection assays, neutralization assay, and pretreatment assay, using cell culture. These approaches using rotavirus particles will provide novel information that has been difficult to obtain from glycan microarray using recombinant VP8.

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References

  1. Desselberger U (2014) Rotaviruses. Virus Res 190:75–96

    Article  CAS  Google Scholar 

  2. Greenberg HB, Estes MK (2009) Rotaviruses: from pathogenesis to vaccination. Gastroenterology 136:1939–1951

    Article  CAS  Google Scholar 

  3. Baker M, Prasad BVV (2010) Rotavirus cell entry. In: Johnson J (ed) Cell entry by non-enveloped viruses, Current topics in microbiology and immunology, vol 343. Springer, Heidelberg, pp 121–148

    Chapter  Google Scholar 

  4. Dormitzer PR, Sun ZY, Wagner G et al (2002) The rhesus rotavirus VP4 sialic acid binding domain has a galectin fold with a novel carbohydrate binding site. EMBO J 21:885–897

    Article  CAS  Google Scholar 

  5. Hu L, Crawford SE, Czako R et al (2012) Cell attachment protein VP8 of a human rotavirus specially interacts with A-type histo-blood group antigen. Nature 485:256–259

    Article  CAS  Google Scholar 

  6. Pang LL, Wang MX, Sun XM et al (2018) Glycan binding patterns of human rotavirus P[10] VP8 protein. Virol J 15:161. https://doi.org/10.1186/s12985-018-1065-9

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  7. Kim HS, Lee B, Han SY et al (2017) Expression of bovine rotavirus VP8 and preparation of IgY antibodies against recombinant VP8. Acta Virol 61:143–149

    Article  CAS  Google Scholar 

  8. Dunn SJ, Fiore L, Werner RL et al (1995) Immunogenicity, antigenicity, and protection efficacy of baculovirus expressed VP4 trypsin cleavage products, VP5 and VP8 from rhesus rotavirus. Arch Virol 140:1969–1978

    Article  CAS  Google Scholar 

  9. Matthijnssens J, Ciarlet M, McDonald SM et al (2011) Uniformity of rotavirus strain nomenclature proposed by the Rotavirus Classification Working Group (RCWG). Arch Virol 156:1397–1413

    Article  CAS  Google Scholar 

  10. Inagaki M, Muranishi H, Yamada K et al (2014) Bovine k-casein inhibits human rotavirus (HRV) infection via direct binding of glycans to HRV. J Dairy Sci 97:2653–2661

    Article  CAS  Google Scholar 

  11. Nakagomi O (2016) Title of Fundamentals of ultracentrifugal virus purification. https://ls.beckmancoulter.co.jp/files/cases/Fundamentals_of_Ultracentrifugal_Virus_Purification.pdf. Accessed 28 May 2019

  12. Kuno A, Uchiyama N, Koseki-Kuno S et al (2005) Evanescent-field fluorescence-assisted lectin microarray: a new strategy for glycan profiling. Nat Methods 2:851–856

    Article  CAS  Google Scholar 

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Acknowledgments

We appreciate Dr. Osamu Nakagomi, Dr. Toyoko Nakagomi, Dr. Makoto Sugiyama, and Dr. Naoto Ito for their contribution in describing the virus purification. This work was supported by the Japan Society for the Promotion of Science [JSPS, Tokyo, Japan; Grant-in-Aid for Scientific Research (C) no. 17K08398 (to K.Y.) and 18K05504 (to M.I.)].

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Correspondence to Mizuho Inagaki .

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Yamada, K., Nio-Kobayashi, J., Inagaki, M. (2020). Screening for Components/Compounds with Anti-Rotavirus Activity: Detection of Interaction Between Viral Spike Proteins and Glycans. In: Hirabayashi, J. (eds) Lectin Purification and Analysis. Methods in Molecular Biology, vol 2132. Humana, New York, NY. https://doi.org/10.1007/978-1-0716-0430-4_50

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  • DOI: https://doi.org/10.1007/978-1-0716-0430-4_50

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  • Publisher Name: Humana, New York, NY

  • Print ISBN: 978-1-0716-0429-8

  • Online ISBN: 978-1-0716-0430-4

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