Skip to main content

Protocols for Studying Murine ILC Development

  • Protocol
  • First Online:
Innate Lymphoid Cells

Part of the book series: Methods in Molecular Biology ((MIMB,volume 2121))

Abstract

Understanding the origins and developmental trajectory of innate lymphoid cell (ILC) progenitors has been of substantial interest to the fields of ILC biology and immunology. While mature ILC are rare lymphocytes, ILC progenitors represent an even smaller fraction of cells, providing additional challenges in studying them. Moreover, though the approaches to studying these cells are conceptually straightforward, the technical nuances that underlie them can substantially affect the quality of the data. Herein, we provide a detailed protocol for assessing the frequency of ILC progenitors in the bone marrow, their phenotype, and their potential to develop into mature ILC. These methods make up the foundation of in vivo investigations into ILC development, and we hope these thorough protocols and associated notes facilitate additional, high-quality inquiries into this fascinating field.

This is a preview of subscription content, log in via an institution to check access.

Access this chapter

Protocol
USD 49.95
Price excludes VAT (USA)
  • Available as PDF
  • Read on any device
  • Instant download
  • Own it forever
eBook
USD 89.00
Price excludes VAT (USA)
  • Available as EPUB and PDF
  • Read on any device
  • Instant download
  • Own it forever
Softcover Book
USD 119.99
Price excludes VAT (USA)
  • Compact, lightweight edition
  • Dispatched in 3 to 5 business days
  • Free shipping worldwide - see info
Hardcover Book
USD 169.99
Price excludes VAT (USA)
  • Durable hardcover edition
  • Dispatched in 3 to 5 business days
  • Free shipping worldwide - see info

Tax calculation will be finalised at checkout

Purchases are for personal use only

Institutional subscriptions

References

  1. Cherrier DE, Serafini N, Di Santo JP (2018) Innate lymphoid cell development: a T cell perspective. Immunity 48:1091–1103

    Article  CAS  Google Scholar 

  2. Stier MT, Peebles RS (2017) Innate lymphoid cells and allergic disease. Ann Allergy Asthma Immunol 119:480–488

    Article  Google Scholar 

  3. Ghaedi M, Steer CA, Martinez-Gonzalez I et al (2016) Common-lymphoid-progenitor-independent pathways of innate and T lymphocyte development. Cell Rep 15:471–480

    Article  CAS  Google Scholar 

  4. Kondo M, Weissman IL, Akashi K (1997) Identification of clonogenic common lymphoid progenitors in mouse bone marrow. Cell 91:661–672

    Article  CAS  Google Scholar 

  5. Wong SH, Walker JA, Jolin HE et al (2012) Transcription factor RORα is critical for nuocyte development. Nat Immunol 13:229–236

    Article  CAS  Google Scholar 

  6. Hoyler T, Klose CSN, Souabni A et al (2012) The transcription factor GATA-3 controls cell fate and maintenance of type 2 innate lymphoid cells. Immunity 37:634–648

    Article  CAS  Google Scholar 

  7. Klose CSN, Flach M, Möhle L et al (2014) Differentiation of type 1 ILCs from a common progenitor to all helper-like innate lymphoid cell lineages. Cell 157:340–356

    Article  CAS  Google Scholar 

  8. Satoh-Takayama N, Lesjean-Pottier S, Vieira P et al (2010) IL-7 and IL-15 independently program the differentiation of intestinal CD3−NKp46+ cell subsets from Id2-dependent precursors. J Exp Med 207:273–280

    Article  CAS  Google Scholar 

  9. Moro K, Yamada T, Tanabe M et al (2010) Innate production of T(H)2 cytokines by adipose tissue-associated c-Kit(+)Sca-1(+) lymphoid cells. Nature 463:540–544

    Article  CAS  Google Scholar 

  10. Yang Q, Li F, Harly C et al (2015) TCF-1 upregulation identifies early innate lymphoid progenitors in the bone marrow. Nat Immunol 16:1044–1050

    Article  CAS  Google Scholar 

  11. Constantinides MG, McDonald BD, Verhoef PA et al (2014) A committed precursor to innate lymphoid cells. Nature 508:397

    Article  CAS  Google Scholar 

  12. Yu Y, Tsang JCH, Wang C et al (2016) Single-cell RNA-seq identifies a PD-1hi ILC progenitor and defines its development pathway. Nature 539:102–106

    Article  CAS  Google Scholar 

  13. Zook EC, Ramirez K, Guo X et al (2016) The ETS1 transcription factor is required for the development and cytokine-induced expansion of ILC2. J Exp Med 213:687–696

    Article  CAS  Google Scholar 

  14. Stier MT, Zhang J, Goleniewska K et al (2018) IL-33 promotes the egress of group 2 innate lymphoid cells from the bone marrow. J Exp Med 215:263–281

    Article  CAS  Google Scholar 

  15. de Kleer IM, Kool M, de Bruijn MJW et al (2016) Perinatal activation of the interleukin-33 pathway promotes type 2 immunity in the developing lung. Immunity 45:1285–1298

    Article  Google Scholar 

  16. Saluzzo S, Gorki A-D, Rana BMJ et al (2017) First-breath-induced type 2 pathways shape the lung immune environment. Cell Rep 18:1893–1905

    Article  CAS  Google Scholar 

  17. Steer CA, Martinez-Gonzalez I, Ghaedi M et al (2017) Group 2 innate lymphoid cell activation in the neonatal lung drives type 2 immunity and allergen sensitization. J Allergy Clin Immunol 140:593

    Article  CAS  Google Scholar 

  18. Karta MR, Rosenthal PS, Beppu A et al (2018) β2 integrins rather than β1 integrins mediate Alternaria-induced ILC2 trafficking to the lung. J Allergy Clin Immunol 141(1):329–338.e12

    Article  CAS  Google Scholar 

  19. Huang Y, Mao K, Chen X et al (2018) S1P-dependent interorgan trafficking of group 2 innate lymphoid cells supports host defense. Science 359:114–119

    Article  CAS  Google Scholar 

  20. Kim MH, Taparowsky EJ, Kim CH (2015) Retinoic acid differentially regulates the migration of innate lymphoid cell subsets to the gut. Immunity 43:107–119

    Article  CAS  Google Scholar 

  21. Gasteiger G, Fan X, Dikiy S et al (2015) Tissue residency of innate lymphoid cells in lymphoid and nonlymphoid organs. Science 350:981–985

    Article  CAS  Google Scholar 

  22. O’Sullivan TE, Rapp M, Fan X et al (2016) Adipose-resident group 1 innate lymphoid cells promote obesity-associated insulin resistance. Immunity 45:428–441

    Article  Google Scholar 

  23. Nussbaum JC, Van Dyken SJ, von Moltke J et al (2013) Type 2 innate lymphoid cells control eosinophil homeostasis. Nature 502:245–248

    Article  CAS  Google Scholar 

  24. Schneider C, Lee J, Koga S et al (2019) Tissue-resident group 2 innate lymphoid cells differentiate by layered ontogeny and in situ perinatal priming. Immunity 50:1425

    Article  CAS  Google Scholar 

  25. Bando JK, Liang H-E, Locksley RM (2015) Identification and distribution of developing innate lymphoid cells in the fetal mouse intestine. Nat Immunol 16:153–160

    Article  CAS  Google Scholar 

  26. Koga S, Hozumi K, Hirano K et al (2018) Peripheral PDGFRα+ gp38+ mesenchymal cells support the differentiation of fetal liver-derived ILC2. J Exp Med 215:1609–1626

    Article  CAS  Google Scholar 

  27. Xu W, Cherrier DE, Chea S et al (2019) An Id2RFP-reporter mouse redefines innate lymphoid cell precursor potentials. Immunity 50:1054–1068.e3

    Article  CAS  Google Scholar 

  28. Yu X, Wang Y, Deng M et al (2014) The basic leucine zipper transcription factor NFIL3 directs the development of a common innate lymphoid cell precursor. Elife 3. https://doi.org/10.7554/eLife.04406

  29. Maecker HT, Trotter J (2006) Flow cytometry controls, instrument setup, and the determination of positivity. Cytometry A 69A:1037–1042

    Article  Google Scholar 

Download references

Acknowledgments

Optimization of the protocols described herein was supported by the National Institutes of Health (R01AI145265, R01AI124456, R01AI111820, R21AI145397, and U19AI095227) and the US Department of Veterans Affairs (I01BX004299).

Author information

Authors and Affiliations

Authors

Corresponding author

Correspondence to R. Stokes Peebles Jr .

Editor information

Editors and Affiliations

Rights and permissions

Reprints and permissions

Copyright information

© 2020 Springer Science+Business Media, LLC, part of Springer Nature

About this protocol

Check for updates. Verify currency and authenticity via CrossMark

Cite this protocol

Stier, M.T., Peebles, R.S. (2020). Protocols for Studying Murine ILC Development. In: Amarnath, S. (eds) Innate Lymphoid Cells . Methods in Molecular Biology, vol 2121. Humana, New York, NY. https://doi.org/10.1007/978-1-0716-0338-3_2

Download citation

  • DOI: https://doi.org/10.1007/978-1-0716-0338-3_2

  • Published:

  • Publisher Name: Humana, New York, NY

  • Print ISBN: 978-1-0716-0337-6

  • Online ISBN: 978-1-0716-0338-3

  • eBook Packages: Springer Protocols

Publish with us

Policies and ethics