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Facile Preparation of PNA-Peptide Conjugates with a Polar Maleimide-Thioether Linkage

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Peptide Nucleic Acids

Part of the book series: Methods in Molecular Biology ((MIMB,volume 2105))

Abstract

Conjugation of a delivery peptide containing a thiol functionality (e.g., a cysteine residue) with a PNA oligomer displaying a single unprotected aliphatic primary amine (e.g., the N-terminus or a C-terminal lysine residue) can be achieved via a one-pot modification with a bisfunctional maleimide linker also displaying a reactive N-hydroxysuccinimidyl ester group (e.g., Mal-PEG2-OSu). Here, an optimized protocol with respect to ratios between the reactants as well as recommended reaction times is presented. Formation and conversion of the maleimide-PNA intermediate was followed by analytical HPLC as exemplified by its conjugation to (KFF)3K-Cys-NH2. In addition, the reaction time required for direct conversion of a preformed Mal-(CH2)2-(C=O)-PNA oligomer in the presence of a slight excess of thiol-modified peptide (with a varying degree of sterical hindrance: HS-(CH2)2-CONH-(KFF)3K-NH2, (KFF)3K-hCys-NH2 and (KFF)3K-Cys-NH2) is provided.

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References

  1. Ray A, Nordén B (2000) Peptide nucleic acid (PNA): its medical and biotechnical applications and promise for the future. FASEB J 14:1041–1060

    Article  CAS  Google Scholar 

  2. Koppelhus U, Nielsen PE (2003) Cellular delivery of peptide nucleic acid (PNA). Adv Drug Deliv Rev 55:267–280

    Article  CAS  Google Scholar 

  3. Gait MJ (2003) Peptide-mediated cellular delivery of antisense oligonucleotides and their analogues. Cell Mol Life Sci 60:844–853

    Article  CAS  Google Scholar 

  4. Guidotti G, Brambilla L, Rossi D (2017) Cell-penetrating peptides; from basic research to clinics. Trends Pharmacol Sci 38:406–424

    Article  CAS  Google Scholar 

  5. Ramsey JD, Flynn NH (2015) Cell-penetrating peptides transport therapeutics into cells. Pharmacol Ther 154:78–86

    Article  CAS  Google Scholar 

  6. Kurrikoff K, Gestin M, Langel U (2016) Recent in vivo advances in cell-penetrating peptide-assisted drug delivery. Expert Opin Drug Deliv 13:373–387

    Article  CAS  Google Scholar 

  7. Lebleu B, Moulton HM, Abes R, Ivanova GD, Abes S, Stein DA, Iversen PL, Arzumanov AA, Gait MJ (2008) Cell penetrating peptide conjugates of steric block oligonucleotides. Adv Drug Deliv Rev 60:517–529

    Article  CAS  Google Scholar 

  8. Bendifallah N, Rasmussen FW, Zachar V, Ebbesen P, Nielsen PE, Koppelhus U (2006) Evaluation of cell-penetrating peptides (CPPs) as vehicles for intracellular delivery of antisense peptide nucleic acid (PNA). Bioconjugate Chem 17:750–758

    Article  CAS  Google Scholar 

  9. Basu S, Wickstrom E (1997) Synthesis and characterization of a peptide nucleic acid conjugated to a d-peptide analog of insulin-like growth factor 1 for increased cellular uptake. Bioconjugate Chem 8:481–488

    Article  CAS  Google Scholar 

  10. de Koning MC, van der Marel GA, Overhand M (2003) Synthetic developments towards PNA–peptide conjugates. Curr Opin Chem Biol 7:734–740

    Article  Google Scholar 

  11. Fabani MM, Ivanova GD, Gait MJ (2008) Chapter 4: Peptide-peptide nucleic acid conjugates for modulation of gene expression. In: Kurreck J (ed) RSC biomolecular sciences: therapeutic oligonucleotides. Royal Chemical Society, Cambridge, UK, pp 80–102

    Chapter  Google Scholar 

  12. Svensen N, Díaz-Mochón JJ, Bradley M (2008) Microwave-assisted orthogonal synthesis of PNA-peptide conjugates. Tetrahedron Lett 49:6498–6500

    Article  CAS  Google Scholar 

  13. Fabani MM, Abreu-Goodger C, Williams D, Lyons PA, Torres AG, Smith KG, Enright AJ, Gait MJ, Vigorito E (2010) Efficient inhibition of miR-155 function in vivo by peptide nucleic acids. Nucleic Acids Res 38:4466–4475

    Article  CAS  Google Scholar 

  14. Hansen AM, Bonke G, Hogendorph WFJ, Björkling F, Nielsen J, Nielsen PE, Kongstad KT, Zabicka D, Franzyk H (2019) Microwave-assisted solid-phase synthesis of antisense acpP peptide nucleic acid-peptide conjugates active against colistin- and tigecycline-resistant E. coli and K. pneumoniae. Eur J Med Chem 168:134–145

    Article  CAS  Google Scholar 

  15. Abes S, Ivanova GD, Abes R, Arzumanov AA, Williams D, Owen D, Lebleu B, Gait MJ (2009) Peptide-based delivery of steric-block PNA oligonucleotides. Methods Mol Biol 480:85–99

    Article  CAS  Google Scholar 

  16. Patil NA, Karas JA, Turner BJ, Shabanpoor F (2019) Thiol-cyanobenzothiazole ligation for the efficient preparation of peptide−PNA conjugates. Bioconjugate Chem 30:793–799

    Article  CAS  Google Scholar 

  17. Awasthi SK, Nielsen PE (2002) Synthesis of PNA-peptide conjugates. Methods Mol Biol 208:43–52

    CAS  PubMed  Google Scholar 

  18. Neuner P, Gallo P, Orsatti L, Fontana L, Monaci P (2003) An efficient and versatile synthesis of bisPNA-peptide conjugates based on chemoselective oxime formation. Bioconjugate Chem 14:276–281

    Article  CAS  Google Scholar 

  19. de Koning MC, Filippov DV, Meeuwenoord N, Overhand M, van der Marel GA, van Boom JH (2001) Synthesis of a PNA-peptide conjugate by chemical ligation. Synlett 10:1516–1518

    Article  Google Scholar 

  20. Równicki M, Wojciechowska M, Wierzba AJ, Czarnecki J, Bartosik D, Gryko D, Trylska J (2017) Vitamin B12 as a carrier of peptide nucleic acid (PNA) into bacterial cells. Sci Rep 7:7644

    Article  Google Scholar 

  21. Deuss PJ, Arzumanov AA, Williams DL, Gait MJ (2013) Parallel synthesis and splicing redirection activity of cell-penetrating peptide conjugate libraries of a PNA Cargo. Org Biomol Chem 11:7621–7630

    Article  CAS  Google Scholar 

  22. Good L, Awasthi SK, Dryselius R, Larsson O, Nielsen PE (2001) Bactericidal antisense effects of peptide-PNA conjugates. Nat Biotechnol 19:360–364

    Article  CAS  Google Scholar 

  23. Harrison JG, Frier C, Laurant R, Dennis R, Raney KD, Balasubramanian S (1999) Inhibition of the human telomerase by PNA-cationic peptide conjugates. Bioorg Med Chem Lett 9:1273–1278

    Article  CAS  Google Scholar 

  24. Nanaware-Kharade N, Gonzalez GA III, Lay JO Jr, Hendrickson HP, Peterson EC (2012) Therapeutic anti-methamphetamine antibody fragment-nanoparticle conjugates: synthesis and in vitro characterization. Bioconjugate Chem 23:1864–1872

    Article  CAS  Google Scholar 

  25. Taylor SK, Pei R, Moon BC, Damera S, Shen A, Stojanovic MN (2009) Triggered release of an active peptide conjugate from a DNA device by an orally administrable small molecule. Angew Chem Int Ed 48:4394–4397

    Article  CAS  Google Scholar 

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Acknowledgments

This research was supported by the Department of Drug Design and Pharmacology and Center for Peptide-Based Antibiotics (Cepan).

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Correspondence to Henrik Franzyk .

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Hansen, A.M., Shaikh, A.Y., Franzyk, H. (2020). Facile Preparation of PNA-Peptide Conjugates with a Polar Maleimide-Thioether Linkage. In: Nielsen, P. (eds) Peptide Nucleic Acids. Methods in Molecular Biology, vol 2105. Humana, New York, NY. https://doi.org/10.1007/978-1-0716-0243-0_6

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  • DOI: https://doi.org/10.1007/978-1-0716-0243-0_6

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  • Publisher Name: Humana, New York, NY

  • Print ISBN: 978-1-0716-0242-3

  • Online ISBN: 978-1-0716-0243-0

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