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Breast Cancer Metabolomics Using NMR

  • Uma Sharma
  • Naranamangalam R. Jagannathan
Protocol
Part of the Methods in Molecular Biology book series (MIMB, volume 2037)

Abstract

Continued progress is being made in understanding the breast cancer metabolism using analytical magnetic resonance (MR)-based methods like nuclear magnetic resonance (NMR) and in-vivo MR spectroscopy (MRS). Analyses using these methods have enhanced the knowledge of altered biochemical pathways associated with breast cancer progression, regression, and pathogenesis. Comprehensive metabolic profiling of biological samples like tissues, cell lines, fine needle aspirate, and biofluids such as sera and urine enables identification of new biomarkers and abnormalities in biochemical pathways. These methods are not only useful for diagnosis, therapy monitoring, disease progression, and staging of cancer but also for the identification of new therapeutic targets and designing new treatment strategies. Additionally, in-vivo MRS studies have established choline-containing compounds (tCho) as biomarkers of malignancy, which is useful for enhancing the diagnostic specificity of magnetic resonance imaging (MRI). Recent technological developments related to in-vivo MRS such as increased magnetic field strength, multichannel phased array breast coils, and absolute quantification of tCho have provided a better understanding of the tumor heterogeneity, metabolism, and pathogenesis. This chapter focuses on providing the experimental aspects of in-vitro, ex-vivo, and in-vivo MR spectroscopy methods used for metabolomics studies of breast cancer.

Key words

In-vitro NMR Ex-vivo NMR In-vivo MRS Metabolomics Breast cancer Choline Perchloric acid extraction Acetonitrile extraction Chloroform-methanol extraction 

Notes

Acknowledgments

The Science and Engineering Research Board (SERB), Government of India is acknowledged for financial support (SP/S0/B27/95; SP/S0/B21/2001; SP/SO/HS-80/2006 and SR/SO/HS/213/2012) and a J.C. Bose Fellowship to NRJ.

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Copyright information

© Springer Science+Business Media, LLC, part of Springer Nature 2019

Authors and Affiliations

  • Uma Sharma
    • 1
  • Naranamangalam R. Jagannathan
    • 1
  1. 1.Department of NMR and MRI FacilityAll India Institute of Medical SciencesNew DelhiIndia

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