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Application of Deep Mutational Scanning in Hepatitis C Virus

  • Nicholas C. WuEmail author
  • Hangfei Qi
Protocol
Part of the Methods in Molecular Biology book series (MIMB, volume 1911)

Abstract

Mutagenesis is one of the key techniques in virus research. The recent development of deep mutational scanning allows the assessment of replication fitness effects of a large number of viral mutants in a high-throughput manner. Here, we describe a protocol for studying hepatitis C virus (HCV) using deep mutational scanning, which includes the methodologies for mutant library construction, passaging, sequencing, and data analysis.

Key words

HCV Deep mutational scanning Mutagenesis Next-generation sequencing Viral fitness 

Notes

Acknowledgment

NCW was supported by the Croucher Foundation Fellowship.

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Copyright information

© Springer Science+Business Media, LLC, part of Springer Nature 2019

Authors and Affiliations

  1. 1.Department of Integrative Structural and Computational BiologyThe Scripps Research InstituteLa JollaUSA
  2. 2.Department of Molecular and Medical PharmacologyUniversity of CaliforniaLos AngelesUSA

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