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Discrete-State Stochastic Modeling of Morphogen Gradient Formation

  • Hamid Teimouri
  • Anatoly B. Kolomeisky
Protocol
Part of the Methods in Molecular Biology book series (MIMB, volume 1863)

Abstract

In biological development, positional information required for pattern formation is carried by the gradients of special signaling molecules, which are called morphogens. It is well known that the establishment of the morphogen gradients is a result of complex physical-chemical processes that involve diffusion, degradation of locally produced signaling molecules, and other biochemical reactions. Here we describe a recently developed discrete-state stochastic theoretical method to explain the formation of morphogen gradients in complex cellular environment.

Key words

Morphogen gradient Local accumulation time Reaction–diffusion processes Spatially varying degradation rate Discrete-state stochastic modeling Nonlinear degradation mechanism Direct-delivery mechanism 

Notes

Acknowledgements

A.B.K. acknowledges the support from the Center for Theoretical Biological Physics (NSF Grant PHY-1427654).

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© Springer Science+Business Media, LLC, part of Springer Nature 2018

Authors and Affiliations

  1. 1.Department of Physics and FAS Center for Systems BiologyHarvard UniversityCambridgeUSA
  2. 2.Department of Chemistry and Center for Theoretical Biological PhysicsRice UniversityHoustonUSA

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