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Mass Spectrometry for Biomarkers Discovery in Esophageal Squamous Cell Carcinoma

  • Farhadul Islam
  • Vinod Gopalan
  • Alfred K. LamEmail author
Protocol
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Part of the Methods in Molecular Biology book series (MIMB, volume 2129)

Abstract

Mass spectrometry-based proteomics analysis could categorize proteins and study their interactions in large scale in human cancers. By this method, many proteins are upregulated or downregulated in esophageal squamous cell carcinoma (ESCC) when compared to nonneoplastic esophageal mucosae. The method can also be used to identify novel, effective biomarkers for early diagnosis or predict prognosis of patients with ESCC. These changes are associated with different clinical and pathological parameters. Different biological matrices such as pathological tissue, body fluids, and cancer cell lines-based proteomics have widely been used. Herein, we described cell line-based label-free shotgun proteomics (in-solution tryptic digestion) to identify the protein biomarkers differently expressed in ESCC.

Key words

Label-free proteomics Shotgun proteomics ESCC Cancer Biomarkers 

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Copyright information

© Springer Science+Business Media, LLC, part of Springer Nature 2020

Authors and Affiliations

  • Farhadul Islam
    • 1
    • 2
  • Vinod Gopalan
    • 1
  • Alfred K. Lam
    • 3
    Email author
  1. 1.Cancer Molecular Pathology of School of MedicineGriffith UniversityGold CoastAustralia
  2. 2.Department of Biochemistry and Molecular BiologyUniversity of RajshahiRajshahiBangladesh
  3. 3.Cancer Molecular Pathology, School of MedicineGriffith UniversityGold CoastAustralia

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