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Purification and Analysis of Strep-tagged Antibody-Fragments

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Book cover Antibody Engineering

Part of the book series: Springer Protocols Handbooks ((SPH))

Abstract

The Strep-tag is a nine-residue minimal peptide sequence with intrinsic affinity towards streptavidin. This peptide – or its improved version Strep-tag II – can be fused to recombinant antibody fragments and other proteins in various fashions. The fact that the interaction between the Strep-tag and streptavidin is highly specific and can be reversed upon addition of biotin (or suitable derivatives such as desthiobiotin) enables a highly efficient affinity chromatography under biochemically mild conditions. Here we describe a protocol for the production and purification of Strep-tagged antibody fragments from bacterial cell lysates using affinity chromatography on a matrix carrying an engineered streptavidin (Strep-Tactin), followed by analysis in ELISA and on Western blots using Strep-Tactin enzyme conjugates or anti-Strep-tag antibodies. Thus, the Strep-tag, which is short, biologically inert, proteolytically stable and does not interfere with membrane translocation or protein folding, offers a versatile tool both for the rapid isolation of antibody fragments and for their detection or molecular analysis.

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References

  • Blake MS, Johnston KH, Russel-Jones GJ, Gotschlich EC (1984) A rapid, sensitive method for detection of alkaline phosphatase-conjugated anti-antibody on Western blots. Anal Biochem 136:175–179

    Article  PubMed  CAS  Google Scholar 

  • Boulot G, Eisele JL, Bentley GA, Bhat TN, Ward ES, Winter G, Poljak RJ (1990) Crystallization and preliminary X-ray diffraction study of the bacterially expressed Fv from the monoclonal anti-lysozyme antibody D1.3 and of its complex with the antigen, lysozyme. J Mol Biol 213:617–619

    Article  PubMed  CAS  Google Scholar 

  • Fling SP, Gregerson DS (1986) Peptide and protein molecular weight determination by electrophoresis using a high-molarity Tris-buffer system without urea. Anal Biochem 155:83–88

    Article  PubMed  CAS  Google Scholar 

  • Korndörfer IP, Skerra A (2002) Improved affinity of engineered streptavidin for the Strep-tag II peptide is due to a fixed open conformation of the lid-like loop at the binding site. Protein Sci 11:883–893

    Article  PubMed  Google Scholar 

  • Ostermeier C, Iwata S, Ludwig B, Michel H (1995) Fv fragment-mediated crystallization of the membrane protein bacterial cytochrome c oxidase. Nature Struct Biol 10:842–846

    Article  Google Scholar 

  • Ostermeier C, Harrenga A, Ermler U, Michel H (1997) Structure at 2.7Å resolution of the Paracoccus denitrificans two-subunit cytochrome c oxidase complexed with an antibody Fv fragment. Proc Natl Acad Sci USA 94:10547–10553

    Article  PubMed  CAS  Google Scholar 

  • Schiweck W, Buxbaum B, Schätzlein C, Neiss HG, Skerra A (1997) Sequence analysis and bacterial production of the anti-c-myc antibody 9E10: the VH domain has an extended CDR-H3 and exhibits unusual solubility. FEBS Lett 414:33–38

    Article  PubMed  CAS  Google Scholar 

  • Schmidt TGM, Skerra A (1993) The random peptide library-assisted engineering of a C-terminal affinity peptide, useful for the detection and purification of a functional Ig Fv fragment. Protein Eng 6:109–122

    Article  PubMed  CAS  Google Scholar 

  • Schmidt TGM, Skerra A (1994) One-step affinity purification of bacterially produced proteins by means of the “Strep tag” and immobilized recombinant core streptavidin. J Chromatogr A 676:337–345

    Article  PubMed  CAS  Google Scholar 

  • Schmidt TGM, Koepke J, Frank R, Skerra A (1996) Molecular Interaction between the Strep-tag affinity peptide and ist cognate target, streptavidin. J Mol Biol 255:753–766

    Article  PubMed  CAS  Google Scholar 

  • Schmidt TGM, Skerra A (2007) The Strep-tag system for one-step purification and high-affinity detection or capturing of proteins. Nat Protoc 2:1528–1535

    Article  PubMed  CAS  Google Scholar 

  • Skerra A (1994a) A general vector, pASK84, for cloning, bacterial production, and single-step purification of antibody Fab fragments. Gene 141:79–84

    Article  PubMed  CAS  Google Scholar 

  • Skerra A (1994b) Use of the tetracycline promotor for the tightly regulated production of a murine antibody fragment in Escherichia coli. Gene 151:131–135

    Article  PubMed  CAS  Google Scholar 

  • Skerra A, Plückthun A (1988) Assembly of a functional immunoglobulin Fv fragment in Escherichia coli. Science 240:1038–1041

    Article  PubMed  CAS  Google Scholar 

  • Skerra A, Schmidt TGM (2000) Use of the Strep-Tag and streptavidin for detection and purification of recombinant proteins. Methods Enzymol 326:271–304

    Article  PubMed  CAS  Google Scholar 

  • Voss S, Skerra A (1997) Mutagenesis of a flexible loop in streptavidin leads to higher affinity for the Strep-tag II peptide and improved performance in recombinant protein purification. Protein Eng 10:975–982

    Article  PubMed  CAS  Google Scholar 

  • Yanisch-Perron C, Vieira J, Messing J (1985) Improved M13 phage cloning vectors and host strains: nucleotide sequences of the M13mp18 and pUC19 vectors. Gene 33:103–119

    Article  PubMed  CAS  Google Scholar 

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Correspondence to Arne Skerra .

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Schlapschy, M., Skerra, A. (2010). Purification and Analysis of Strep-tagged Antibody-Fragments. In: Kontermann, R., Dübel, S. (eds) Antibody Engineering. Springer Protocols Handbooks. Springer, Berlin, Heidelberg. https://doi.org/10.1007/978-3-642-01147-4_25

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  • DOI: https://doi.org/10.1007/978-3-642-01147-4_25

  • Publisher Name: Springer, Berlin, Heidelberg

  • Print ISBN: 978-3-642-01146-7

  • Online ISBN: 978-3-642-01147-4

  • eBook Packages: Springer Protocols

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