Abstract
Yeast cells are well suited to visualizing organelles by 4D confocal microscopy. Typically, one or more cellular compartments are labeled with a fluorescent protein or dye, and a stack of confocal sections spanning the entire cell volume is captured every few seconds. Under appropriate conditions, organelle dynamics can be observed for many minutes with only limited photobleaching. Images are captured at a relatively low signal-to-noise ratio and are subsequently processed to generate movies that can be analyzed and quantified. Here, we describe methods for acquiring and processing 4D data using conventional scanning confocal microscopy.
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References
Arigovindan M, Fung JC, Elnatan D, Menella V, Chan YH, Pollard M, Branlund E, Sedat JW, Agard DA (2013) High-resolution restoration of 3D structures from widefield images with extreme low signal-to-noise-ratio. Proc Natl Acad Sci U S A 110:17344–17349
Kurokawa K, Ishii M, Suda Y, Ichihara A, Nakano A (2013) Live cell visualization of Golgi membrane dynamics by super-resolution confocal live imaging microscopy. Methods Cell Biol 118:235–242
Vida TA, Emr SD (1995) A new vital stain for visualizing vacuolar membrane dynamics and endocytosis in yeast. J Cell Biol 128:779–792
Pawley JB (2006) Handbook of biological confocal microscopy, 3rd edn. Springer, New York
Losev E, Reinke CA, Jellen J, Strongin DE, Bevis BJ, Glick BS (2006) Golgi maturation visualized in living yeast. Nature 22:1002–1006
Genové G, Glick BS, Barth AL (2005) Brighter reporter genes from multimerized fluorescent proteins. Biotechniques 39:814–822
Connerly PL, Esaki M, Montegna EA, Strongin DE, Levi S, Soderholm J, Glick BS (2005) Sec16 is a determinant of transitional ER organization. Curr Biol 15:1439–1447
Bevis BJ, Glick BS (2002) Rapidly maturing variants of the Discosoma red fluorescent protein (DsRed). Nat Biotechnol 20:83–87
Hammond AT, Glick BS (2000) Raising the speed limits for 4D fluorescence microscopy. Traffic 1:935–940
Papanikou E, Day KJ, Austin JI, Glick BS (2015) COPI selectively drives maturation of the early Golgi. Elife 4:13232. doi:10.7554/eLife
Rossanese OW, Soderholm J, Bevis BJ, Sears IB, O’Connor J, Williamson EK, Glick BS (1999) Golgi structure correlates with transitional endoplasmic reticulum organization in Pichia pastoris and Saccharomyces cerevisiae. J Cell Biol 145:69–81
Rothstein R (1991) Targeting, disruption, replacement, and allele rescue: integrative DNA transformation in yeast. Methods Enzymol 194:281–301
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4D movie of yeast Golgi compartments before deconvolution. See the legend to Fig. 1 (MOV 1139 kb)
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Day, K.J., Papanikou, E., Glick, B.S. (2016). 4D Confocal Imaging of Yeast Organelles. In: Brown, W. (eds) The Golgi Complex. Methods in Molecular Biology, vol 1496. Humana Press, New York, NY. https://doi.org/10.1007/978-1-4939-6463-5_1
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DOI: https://doi.org/10.1007/978-1-4939-6463-5_1
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Publisher Name: Humana Press, New York, NY
Print ISBN: 978-1-4939-6461-1
Online ISBN: 978-1-4939-6463-5
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