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Liquid Biopsy for Investigation of Cancer DNA in Esophageal Squamous Cell Carcinoma

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Esophageal Squamous Cell Carcinoma

Part of the book series: Methods in Molecular Biology ((MIMB,volume 2129))

Abstract

Early detection of cancer and the monitoring of cancer recurrence in treated patients are significant challenges in esophageal squamous cell carcinoma (ESCC). Liquid biopsy is the identification of tumor biomarkers from minimally invasive samples of biological fluids, including urine, blood, stool, saliva, or cerebrospinal fluid. Liquid biopsy offers a potential solution to the problems of detection and surveillance as DNA shed from cancer cells as cell-free DNA or in exosomes can be detected in body fluids. By detecting these DNAs, we can identify the presence of cancer-associated mutations for basic detection, as well as to obtain information on the recurrence and evolution of disease following initial treatment. These sources of information have the potential to significantly improve the management of patients with ESCC. In this chapter, we detail a method for the isolation of cell-free DNA from blood plasma and DNA associated with exosomes in blood from patients with esophageal squamous cell carcinomas.

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References

  1. Castro C, Peleteiro B, Lunet N (2018) Modifiable factors and esophageal cancer: a systematic review of published meta-analyses. J Gastroenterol 53:37–51

    Article  Google Scholar 

  2. Luo H, Li H, Hu Z, Wu H, Liu C, Li Y, Zhang X, Lin P, Hou Q, Ding G, Wang Y, Li S, Wei D, Qiu F, Li Y, Wu S (2016) Noninvasive diagnosis and monitoring of mutations by deep sequencing of circulating tumor DNA in esophageal squamous cell carcinoma. Biochem Biophys Res Commun 471:596–602

    Article  CAS  Google Scholar 

  3. Li X, Ye M, Zhang W, Tan D, Jaffrezic-Renault N, Yang X, Guo Z (2019) Liquid biopsy of circulating tumor DNA and biosensor applications. Biosens Bioelectron 126:596–607

    Article  CAS  Google Scholar 

  4. Lianidou E, Pantel K (2019) Liquid biopsies. Genes Chromosomes Cancer 58:219–232

    Article  CAS  Google Scholar 

  5. Hsieh CC, Hsu HS, Chang SC, Chen YJ (2016) Circulating cell-free DNA levels could predict oncological outcomes of patients undergoing esophagectomy for esophageal squamous cell carcinoma. Int J Mol Sci 17:E2131

    Article  Google Scholar 

  6. Ueda M, Iguchi T, Masuda T, Nakahara Y, Hirata H, Uchi R, Niida A, Momose K, Sakimura S, Chiba K, Eguchi H, Ito S, Sugimachi K, Yamasaki M, Suzuki Y, Miyano S, Doki Y, Mori M, Mimori K (2016) Somatic mutations in plasma cell-free DNA are diagnostic markers for esophageal squamous cell carcinoma recurrence. Oncotarget 7:62280–62291

    Article  Google Scholar 

  7. Ruivo CF, Adem B, Silva M, Melo SA (2017) The biology of cancer exosomes: insights and new perspectives. Cancer Res 77:6480–6488

    Article  CAS  Google Scholar 

  8. Elazezy M, Joosse SA (2018) Techniques of using circulating tumor DNA as a liquid biopsy component in cancer management. Comput Struct Biotechnol J 16:370–378

    Article  CAS  Google Scholar 

  9. Corcoran RB, Chabner BA (2018) Application of cell-free DNA analysis to cancer treatment. N Engl J Med 379:1754–1765

    Article  CAS  Google Scholar 

  10. Fettke H, Kwan EM, Azad AA (2019) Cell-free DNA in cancer: current insights. Cell Oncol (Dordr) 42:13–28

    Article  CAS  Google Scholar 

  11. Alidousty C, Brandes D, Heydt C, Wagener S, Wittersheim M, Schäfer SC, Holz B, Merkelbach-Bruse S, Büttner R, Fassunke J, Schultheis AM (2017) Comparison of blood collection tubes from three different manufacturers for the collection of cell-free DNA for liquid biopsy mutation testing. J Mol Diagn 19:801–804

    Article  CAS  Google Scholar 

  12. Eisenberger CF, Knoefel WT, Peiper M, Merkert P, Yekebas EF, Scheunemann P, Steffani K, Stoecklein NH, Hosch SB, Izbicki JR (2003) Squamous cell carcinoma of the esophagus can be detected by microsatellite analysis in tumor and serum. Clin Cancer Res 9:4178–4183

    CAS  PubMed  Google Scholar 

  13. Ikoma D, Ichikawa D, Ueda Y, Tani N, Tomita H, Sai S, Kikuchi S, Fujiwara H, Otsuji E, Yamagishi H (2007) Circulating tumor cells and aberrant methylation as tumor markers in patients with esophageal cancer. Anticancer Res 27:535–539

    PubMed  Google Scholar 

  14. Ling ZQ, Zhao Q, Zhou SL, Mao WM (2012) MSH2 promoter hypermethylation in circulating tumor DNA is a valuable predictor of disease-free survival for patients with esophageal squamous cell carcinoma. Eur J Surg Oncol 38:326–332

    Article  CAS  Google Scholar 

  15. Das M, Sharma SK, Sekhon GS, Saikia BJ, Mahanta J, Phukan RK (2014) Promoter methylation of MGMT gene in serum of patients with esophageal squamous cell carcinoma in North East India. Asian Pac J Cancer Prev 15:9955–9960

    Article  Google Scholar 

  16. Tomita H, Ichikawa D, Ikoma D, Sai S, Tani N, Ikoma H, Fujiwara H, Kikuchi S, Okamoto K, Ochiai T, Otsuji E (2007) Quantification of circulating plasma DNA fragments as tumor markers in patients with esophageal cancer. Anticancer Res 27:2737–2741

    CAS  PubMed  Google Scholar 

  17. Xu Y, Xie Z, Lu H (2018) Detection of epidermal growth factor receptor mutation in the peripheral blood of patients with esophageal carcinoma to guide epidermal growth factor receptor-tyrosine kinase inhibitor treatment. J Cancer Res Ther 14:103–105

    Article  CAS  Google Scholar 

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Correspondence to Robert A. Smith .

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Smith, R.A., Lam, A.K. (2020). Liquid Biopsy for Investigation of Cancer DNA in Esophageal Squamous Cell Carcinoma. In: Lam, A. (eds) Esophageal Squamous Cell Carcinoma. Methods in Molecular Biology, vol 2129. Humana, New York, NY. https://doi.org/10.1007/978-1-0716-0377-2_16

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  • DOI: https://doi.org/10.1007/978-1-0716-0377-2_16

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  • Publisher Name: Humana, New York, NY

  • Print ISBN: 978-1-0716-0376-5

  • Online ISBN: 978-1-0716-0377-2

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