Volume 3, issue 1, December 2015
79 articles in this issue
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Sources of airborne microorganisms in the built environment
Authors
- Aaron J. Prussin II
- Linsey C. Marr
- Content type: Review
- Open Access
- Published: 22 December 2015
- Article: 78
This is part of 1 collection: -
Erratum to: Type 2 immunity-dependent reduction of segmented filamentous bacteria in mice infected with the helminthic parasite Nippostrongylus brasiliensis
Authors (first, second and last of 11)
- W. Florian Fricke
- Yang Song
- Aiping Zhao
- Content type: Erratum
- Open Access
- Published: 21 December 2015
- Article: 77
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The Tasmanian devil microbiome—implications for conservation and management
Authors (first, second and last of 6)
- Yuanyuan Cheng
- Samantha Fox
- Katherine Belov
- Content type: Research
- Open Access
- Published: 21 December 2015
- Article: 76
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Optimal screening and donor management in a public stool bank
Authors (first, second and last of 4)
- Abbas Kazerouni
- James Burgess
- Lawrence M. Wein
- Content type: Research
- Open Access
- Published: 17 December 2015
- Article: 75
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The administration of intranasal live attenuated influenza vaccine induces changes in the nasal microbiota and nasal epithelium gene expression profiles
Authors (first, second and last of 12)
- Y. Tarabichi
- K. Li
- Jane C. Deng
- Content type: Research
- Open Access
- Published: 15 December 2015
- Article: 74
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Simultaneous fecal microbial and metabolite profiling enables accurate classification of pediatric irritable bowel syndrome
Authors
- Vijay Shankar
- Nicholas V. Reo
- Oleg Paliy
- Content type: Short report
- Open Access
- Published: 09 December 2015
- Article: 73
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Microbial aerosol liberation from soiled textiles isolated during routine residuals handling in a modern health care setting
Authors (first, second and last of 10)
- Alina Handorean
- Charles E. Robertson
- Mark Hernandez
- Content type: Research
- Open Access
- Published: 09 December 2015
- Article: 72
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Moisture parameters and fungal communities associated with gypsum drywall in buildings
Authors
- Sandra Dedesko
- Jeffrey A. Siegel
- Content type: Review
- Open Access
- Published: 08 December 2015
- Article: 71
This is part of 1 collection: -
Self-tracking the microbiome: where do we go from here?
Authors
- Carine Gimbert
- François-Joseph Lapointe
- Content type: Commentary
- Open Access
- Published: 12 December 2015
- Article: 70
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Protein relative abundance patterns associated with sucrose-induced dysbiosis are conserved across taxonomically diverse oral microcosm biofilm models of dental caries
Authors (first, second and last of 8)
- Joel D. Rudney
- Pratik D. Jagtap
- Timothy J. Griffin
- Content type: Research
- Open Access
- Published: 19 December 2015
- Article: 69
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Summary of Sloan symposium: healthy buildings 2015-Europe
Authors
- Hal Levin
- Martin Täubel
- Mark Hernandez
- Content type: Meeting Report
- Open Access
- Published: 02 December 2015
- Article: 68
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Water heater temperature set point and water use patterns influence Legionella pneumophila and associated microorganisms at the tap
Authors (first, second and last of 4)
- William J. Rhoads
- Pan Ji
- Marc A. Edwards
- Content type: Research
- Open Access
- Published: 01 December 2015
- Article: 67
This is part of 1 collection: -
Microbial biogeography of a university campus
Authors
- Ashley A. Ross
- Josh D. Neufeld
- Content type: Research
- Open Access
- Published: 01 December 2015
- Article: 66
This is part of 1 collection: -
Potential association of vacuum cleaning frequency with an altered gut microbiota in pregnant women and their 2-year-old children
Authors (first, second and last of 6)
- Ekaterina Avershina
- Anuradha Ravi
- Knut Rudi
- Content type: Research
- Open Access
- Published: 21 December 2015
- Article: 65
This is part of 1 collection: -
Optimizing protocols for extraction of bacteriophages prior to metagenomic analyses of phage communities in the human gut
Authors (first, second and last of 8)
- Josué L. Castro-MejÃa
- Musemma K. Muhammed
- Dennis S. Nielsen
- Content type: Methodology
- Open Access
- Published: 17 November 2015
- Article: 64
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A metagenomic approach from aphid’s hemolymph sheds light on the potential roles of co-existing endosymbionts
Authors (first, second and last of 9)
- Caroline De Clerck
- Akiko Fujiwara
- Sébastien Massart
- Content type: Research
- Open Access
- Published: 15 December 2015
- Article: 63
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A viability-linked metagenomic analysis of cleanroom environments: eukarya, prokaryotes, and viruses
Authors (first, second and last of 8)
- Thomas Weinmaier
- Alexander J. Probst
- Parag Vaishampayan
- Content type: Research
- Open Access
- Published: 08 December 2015
- Article: 62
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Relative and contextual contribution of different sources to the composition and abundance of indoor air bacteria in residences
Authors
- Marzia Miletto
- Steven E. Lindow
- Content type: Research
- Open Access
- Published: 10 December 2015
- Article: 61
This is part of 1 collection: -
The microbiome of the built environment and mental health
Authors (first, second and last of 5)
- Andrew J. Hoisington
- Lisa A. Brenner
- Christopher A. Lowry
- Content type: Review
- Open Access
- Published: 17 December 2015
- Article: 60
This is part of 1 collection: -
The first microbial environment of infants born by C-section: the operating room microbes
Authors (first, second and last of 7)
- Hakdong Shin
- Zhiheng Pei
- Maria G. Dominguez-Bello
- Content type: Research
- Open Access
- Published: 01 December 2015
- Article: 59
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Chemostat culture systems support diverse bacteriophage communities from human feces
Authors (first, second and last of 8)
- Tasha M. Santiago-Rodriguez
- Melissa Ly
- David T. Pride
- Content type: Research
- Open Access
- Published: 09 November 2015
- Article: 58
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Erratum to: Improved OTU-picking using long-read 16S rRNA gene amplicon sequencing and generic hierarchical clustering
Authors (first, second and last of 6)
- Oscar Franzén
- Jianzhong Hu
- Ali Bashir
- Content type: Erratum
- Open Access
- Published: 28 October 2015
- Article: 57
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Metagenomic analysis of the microbiota in the highly compartmented hindguts of six wood- or soil-feeding higher termites
Authors (first, second and last of 8)
- Karen Rossmassler
- Carsten Dietrich
- Andreas Brune
- Content type: Microbiome Announcement
- Open Access
- Published: 26 November 2015
- Article: 56
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Phenotypic differentiation of gastrointestinal microbes is reflected in their encoded metabolic repertoires
Authors (first, second and last of 5)
- Eugen Bauer
- Cedric Christian Laczny
- Ines Thiele
- Content type: Research
- Open Access
- Published: 30 November 2015
- Article: 55
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Characterizing the fecal microbiota of infants with botulism
Authors (first, second and last of 5)
- T. Brian Shirey
- Janet K. Dykes
- Brian H. Raphael
- Content type: Research
- Open Access
- Published: 23 November 2015
- Article: 54
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Variable responses of human and non-human primate gut microbiomes to a Western diet
Authors (first, second and last of 14)
- Katherine R. Amato
- Carl J. Yeoman
- Steven R. Leigh
- Content type: Research
- Open Access
- Published: 16 November 2015
- Article: 53
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Context and the human microbiome
Authors
- Daniel McDonald
- Amanda Birmingham
- Rob Knight
- Content type: Review
- Open Access
- Published: 04 November 2015
- Article: 52
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The functionality of the gastrointestinal microbiome in non-human animals
Authors
- Irene Hanning
- Sandra Diaz-Sanchez
- Content type: Review
- Open Access
- Published: 10 November 2015
- Article: 51
This is part of 1 collection: -
Microbiomes of the dust particles collected from the International Space Station and Spacecraft Assembly Facilities
Authors (first, second and last of 11)
- Aleksandra Checinska
- Alexander J. Probst
- Kasthuri Venkateswaran
- Content type: Research
- Open Access
- Published: 27 October 2015
- Article: 50
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Microbiota of the indoor environment: a meta-analysis
Authors (first, second and last of 4)
- Rachel I. Adams
- Ashley C. Bateman
- James F. Meadow
- Content type: Research
- Open Access
- Published: 13 October 2015
- Article: 49
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An accurate and efficient experimental approach for characterization of the complex oral microbiota
Authors (first, second and last of 7)
- Wei Zheng
- Maria Tsompana
- Michael J. Buck
- Content type: Methodology
- Open Access
- Published: 05 October 2015
- Article: 48
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Phylogenetic approaches to microbial community classification
Authors
- Jie Ning
- Robert G. Beiko
- Content type: Research
- Open Access
- Published: 05 October 2015
- Article: 47
This is part of 1 collection: -
Passive dust collectors for assessing airborne microbial material
Authors (first, second and last of 6)
- Rachel I. Adams
- Yilin Tian
- Martin Täubel
- Content type: Research
- Open Access
- Published: 05 October 2015
- Article: 46
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Intestinal microbial communities associated with acute enteric infections and disease recovery
Authors (first, second and last of 15)
- Pallavi Singh
- Tracy K. Teal
- Shannon D. Manning
- Content type: Research
- Open Access
- Published: 22 September 2015
- Article: 45
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Ecology of bacteria in the human gastrointestinal tract—identification of keystone and foundation taxa
Authors
- PÃ¥l Trosvik
- Eric Jacques de Muinck
- Content type: Research
- Open Access
- Published: 12 October 2015
- Article: 44
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Improved OTU-picking using long-read 16S rRNA gene amplicon sequencing and generic hierarchical clustering
Authors (first, second and last of 6)
- Oscar Franzén
- Jianzhong Hu
- Ali Bashir
- Content type: Methodology
- Open Access
- Published: 05 October 2015
- Article: 43
This is part of 1 collection: -
Cultivation of stable, reproducible microbial communities from different fecal donors using minibioreactor arrays (MBRAs)
Authors
- Jennifer M. Auchtung
- Catherine D. Robinson
- Robert A. Britton
- Content type: Research
- Open Access
- Published: 30 September 2015
- Article: 42
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The role of breast-feeding in infant immune system: a systems perspective on the intestinal microbiome
Authors (first, second and last of 4)
- Paurush Praveen
- Ferenc Jordan
- Melissa J. Morine
- Content type: Research
- Open Access
- Published: 24 September 2015
- Article: 41
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Type 2 immunity-dependent reduction of segmented filamentous bacteria in mice infected with the helminthic parasite Nippostrongylus brasiliensis
Authors (first, second and last of 11)
- W. Florian Fricke
- Yang Song
- Aiping Zhao
- Content type: Research
- Open Access
- Published: 17 September 2015
- Article: 40
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Metagenomic and metatranscriptomic inventories of the lower Amazon River, May 2011
Authors (first, second and last of 11)
- Brandon M. Satinsky
- Caroline S. Fortunato
- Byron C. Crump
- Content type: Microbiome Announcement
- Open Access
- Published: 10 September 2015
- Article: 39
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In silico analyses of metagenomes from human atherosclerotic plaque samples
Authors (first, second and last of 18)
- Suparna Mitra
- Daniela I. Drautz-Moses
- Michael Givskov
- Content type: Research
- Open Access
- Published: 03 September 2015
- Article: 38
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The effect of dietary resistant starch type 2 on the microbiota and markers of gut inflammation in rural Malawi children
Authors (first, second and last of 13)
- M. Isabel Ordiz
- Thaddaeus D. May
- Mark J. Manary
- Content type: Research
- Open Access
- Published: 03 September 2015
- Article: 37
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Structure and function of the healthy pre-adolescent pediatric gut microbiome
Authors (first, second and last of 14)
- Emily B. Hollister
- Kevin Riehle
- James Versalovic
- Content type: Research
- Open Access
- Published: 26 August 2015
- Article: 36
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Humanized microbiota mice as a model of recurrent Clostridium difficile disease
Authors (first, second and last of 5)
- James Collins
- Jennifer M. Auchtung
- Robert A. Britton
- Content type: Research
- Open Access
- Published: 20 August 2015
- Article: 35
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Erratum to: Stability of operational taxonomic units: an important but neglected property for analyzing microbial diversity
Authors (first, second and last of 11)
- Yan He
- J. Gregory Caporaso
- Hong-Wei Zhou
- Content type: Erratum
- Open Access
- Published: 31 July 2015
- Article: 34
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Collection media and delayed freezing effects on microbial composition of human stool
Authors (first, second and last of 7)
- Roberto Flores
- Jianxin Shi
- Rashmi Sinha
- Content type: Methodology
- Open Access
- Published: 12 August 2015
- Article: 33
This is part of 1 collection: -
Xander: employing a novel method for efficient gene-targeted metagenomic assembly
Authors (first, second and last of 7)
- Qiong Wang
- Jordan A. Fish
- James R. Cole
- Content type: Software
- Open Access
- Published: 05 August 2015
- Article: 32
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The vocabulary of microbiome research: a proposal
Authors
- Julian R. Marchesi
- Jacques Ravel
- Content type: Editorial
- Open Access
- Published: 30 July 2015
- Article: 31
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Amplicon sequencing for the quantification of spoilage microbiota in complex foods including bacterial spores
Authors (first, second and last of 10)
- Paulo de Boer
- Martien Caspers
- Remco Kort
- Content type: Methodology
- Open Access
- Published: 27 July 2015
- Article: 30