Volume 6, supplement issue 1, March 2014
9th German Conference on Chemoinformatics
- Issue editor
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- Fechner Uli
89 articles in this issue
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Putting together the pieces: building a reaction-centric electronic lab notebook for mobile devices
Authors
- Alex Clark
- Content type: Oral presentation
- Open Access
- Published: 11 March 2014
- Article: O1
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Can quantum-chemical NMR chemical shifts be used as criterion for force-field development
Authors (first, second and last of 4)
- Thomas E Exner
- Andrea Frank
- Martin Dračínský
- Content type: Oral presentation
- Open Access
- Published: 11 March 2014
- Article: O2
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Facing the challenges of computational target prediction
Authors
- Karen T Schomburg
- Matthias Rarey
- Content type: Oral presentation
- Open Access
- Published: 11 March 2014
- Article: O3
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Visualization of chemical space for medicinal chemists
Authors
- Peter Ertl
- Content type: Oral presentation
- Open Access
- Published: 11 March 2014
- Article: O4
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What compound should I make next? Using Matched Molecular Series for prospective medicinal chemistry
Authors
- Noel M O’Boyle
- Roger Sayle
- Jonas Boström
- Content type: Oral presentation
- Open Access
- Published: 11 March 2014
- Article: O5
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Limits to molecular matched-pair analysis: the experimental uncertainty case
Authors
- Christian Kramer
- Klaus Liedl
- Content type: Oral presentation
- Open Access
- Published: 11 March 2014
- Article: O6
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An automatic system for the simultaneous translation of lectures
Authors
- Sebastian Stüker
- Content type: Oral presentation
- Open Access
- Published: 11 March 2014
- Article: O7
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Entropy in specificity and thermodynamics of binding
Authors
- Klaus R Liedl
- Content type: Oral presentation
- Open Access
- Published: 11 March 2014
- Article: O8
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Development of cannabinoid receptor (CB 2 R) ligands for application in PET studies - where to attach the radiolabel?
Authors (first, second and last of 6)
- Robert Günther
- Rareş Moldovan
- Peter Brust
- Content type: Oral presentation
- Open Access
- Published: 11 March 2014
- Article: O9
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Quantum-mechanics-based molecular interaction fields for 3D-QSAR
Authors (first, second and last of 5)
- Ahmed ElKerdawy
- Stefan Güssregen
- Timothy Clark
- Content type: Oral presentation
- Open Access
- Published: 11 March 2014
- Article: O10
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Go with the flow and accessorize your drugs
Authors
- Gisbert Schneider
- Content type: Oral presentation
- Open Access
- Published: 11 March 2014
- Article: O11
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Identification of host interactions for phenotypic antimalarial hits
Authors
- Andreas Spitzmüller
- Jordi Mestres
- Content type: Oral presentation
- Open Access
- Published: 11 March 2014
- Article: O12
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Looking over the rim: algorithms for cheminformatics from computer scientists
Authors
- Thorsten Meinl
- Bernd Wiswedel
- Michael R Berthold
- Content type: Oral presentation
- Open Access
- Published: 11 March 2014
- Article: O13
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Structure-activity relationship analysis on the basis of matched molecular pairs
Authors
- Anne Mai Wassermann
- Content type: Oral presentation
- Open Access
- Published: 11 March 2014
- Article: O14
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Combining pharmacophore- and MD-based modelling for phase II metabolism prediction
Authors
- Christin Rakers
- Gerhard Wolber
- Content type: Oral presentation
- Open Access
- Published: 11 March 2014
- Article: O15
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Analysis and visual summarization of molecular dynamics simulation
Authors
- Fredrick Robin Devadoss
- Victor Paul Raj
- Content type: Oral presentation
- Open Access
- Published: 11 March 2014
- Article: O16
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Validated scoring of halogen bonding in molecular design
Authors
- MO Zimmermann
- A Lange
- FM Boeckler
- Content type: Oral presentation
- Open Access
- Published: 11 March 2014
- Article: O17
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inSARa: intuitive single-target (large-scale) SAR interpretation and multi-target cross-reactivity analysis
Authors
- Sabrina Wollenhaupt
- Knut Baumann
- Content type: Oral presentation
- Open Access
- Published: 11 March 2014
- Article: O18
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Simulating “soft” electronics
Authors
- Tim Clark
- Content type: Oral presentation
- Open Access
- Published: 11 March 2014
- Article: O19
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New insights on the interface between metal oxide and biosystem
Authors (first, second and last of 5)
- Walter Langel
- Susan Köppen
- Bastian Ohler
- Content type: Oral presentation
- Open Access
- Published: 11 March 2014
- Article: O20
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Computational pharmaceutical materials science
Authors
- Jacco van de Streek
- Content type: Oral presentation
- Open Access
- Published: 11 March 2014
- Article: O21
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Balancing selectivity vs stability using molecular dynamics and umbrella sampling
Authors (first, second and last of 6)
- Jeremie Mortier
- Elisabeth K Nyakatura
- Beate Koksch
- Content type: Oral presentation
- Open Access
- Published: 11 March 2014
- Article: O22
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Membrane simulation analysis using Voronoi tessellation
Authors
- Gunther Lukat
- Björn Sommer
- Jens Krüger
- Content type: Oral presentation
- Open Access
- Published: 11 March 2014
- Article: O23
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Use of DEKOIS 2.0 to gain insights for virtual screening
Authors (first, second and last of 4)
- Frank M Boeckler
- Matthias R Bauer
- Simon M Vogel
- Content type: Oral presentation
- Open Access
- Published: 11 March 2014
- Article: O24
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In silico polypharmacology: retrospective recognition vs. rational design
Authors
- Ewgenij Proschak
- Content type: Oral presentation
- Open Access
- Published: 11 March 2014
- Article: O25
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KRIPO – a structure-based pharmacophores approach explains polypharmacological effects
Authors
- Tina Ritschel
- Tom JJ Schirris
- Frans GM Russel
- Content type: Oral presentation
- Open Access
- Published: 11 March 2014
- Article: O26
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Determination of selected cetyltrimethylammonium halide parameters by molecular modeling. Study of their adsorption on montmorillonite
Authors (first, second and last of 4)
- Bekhelifa Leila
- Zizi Zahia
- BenAhmed Abdellatif
- Content type: Poster presentation
- Open Access
- Published: 11 March 2014
- Article: P1
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Theoretical studies on cycloaddition reactions
Authors
- Lydia Rhyman
- Ponnadurai Ramasami
- Luis R Domingo
- Content type: Poster presentation
- Open Access
- Published: 11 March 2014
- Article: P2
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MOGADOC: a database with 3D-structures
Authors (first, second and last of 4)
- Jürgen Vogt
- Evgeny Popov
- Natalja Vogt
- Content type: Poster presentation
- Open Access
- Published: 11 March 2014
- Article: P3
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InChI – the worldwide chemical structure standard
Authors
- Stephen Heller
- Content type: Poster presentation
- Open Access
- Published: 11 March 2014
- Article: P4
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Compound optimization through data set-dependent chemical transformations
Authors
- Antonio de la Vega de León
- Jürgen Bajorath
- Content type: Poster presentation
- Open Access
- Published: 11 March 2014
- Article: P5
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Impact of binding site waters on inhibitor design: contemplating a novel inverse binding mode of indirubin derivatives in DYRK kinases
Authors (first, second and last of 4)
- Daniel Cappel
- Vassilios Myrianthopoulos
- Woody Sherman
- Content type: Poster presentation
- Open Access
- Published: 11 March 2014
- Article: P6
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Charge-related topological index – various chemoinformatics applications
Authors (first, second and last of 5)
- Nikolay T Kochev
- Ivan Bangov
- Borislav Stoyanov
- Content type: Poster presentation
- Open Access
- Published: 11 March 2014
- Article: P7
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The integration of Open3DTOOLS into the RDKit and KNIME
Authors
- Paolo Tosco
- Nikolaus Stiefl
- Greg Landrum
- Content type: Poster presentation
- Open Access
- Published: 11 March 2014
- Article: P8
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Molecular fragment dynamics study on the water-air interface behavior of non-ionic polyoxyethylene alkyl ether surfactants
Authors (first, second and last of 6)
- Andreas Truszkowski
- Annamaria Fiethen
- Matthias Epple
- Content type: Poster presentation
- Open Access
- Published: 11 March 2014
- Article: P9
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Kernel density estimation of CSD distributions - an application to knowledge based molecular optimisation
Authors (first, second and last of 4)
- Patrick McCabe
- Oliver Korb
- Robin Taylor
- Content type: Poster presentation
- Open Access
- Published: 11 March 2014
- Article: P10
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A new software for fragment-based QSAR and its applications
Authors
- Sergey B Sosnin
- Vladimir A Palyulin
- Nikolay S Zefirov
- Content type: Poster presentation
- Open Access
- Published: 11 March 2014
- Article: P11
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Simulation of the influence of oxygen on the chemical stage of radiobiological mechanism using Petri nets
Authors (first, second and last of 4)
- J Barilla
- M Lokajíček
- P Simr
- Content type: Poster presentation
- Open Access
- Published: 11 March 2014
- Article: P12
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Evaluation of molecular model-based discovery of ecto-5’-nucleotidase inhibitors on the basis of X-ray structures
Authors
- Norbert Furtmann
- Jürgen Bajorath
- Content type: Poster presentation
- Open Access
- Published: 11 March 2014
- Article: P13
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Fishing out the signal in polypharmacological high-throughput screening data using novel navigator cheminformatics software
Authors
- Denis Fourches
- Alexander Tropsha
- Content type: Poster presentation
- Open Access
- Published: 11 March 2014
- Article: P14
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Chemistry-wide association studies (CWAS) to determine joint toxicity effects of co-occurring chemical features
Authors (first, second and last of 4)
- Yen Low
- Alexander Sedykh
- Alexander Tropsha
- Content type: Poster presentation
- Open Access
- Published: 11 March 2014
- Article: P15
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Scaffold dependencies for halogen bonding: quantum mechanical investigation of nitrogen-bearing heterocycles
Authors
- A Lange
- MO Zimmermann
- MF Boeckler
- Content type: Poster presentation
- Open Access
- Published: 11 March 2014
- Article: P16
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Introducing fuzziness into maximum common substructures for meaningful cluster characterisation
Authors
- Christian Herhaus
- Content type: Poster presentation
- Open Access
- Published: 11 March 2014
- Article: P17
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Fragment docking supported by NMR shift perturbations
Authors
- Tim ten Brink
- Clementine Aguirre
- Isabelle Krimm
- Content type: Poster presentation
- Open Access
- Published: 11 March 2014
- Article: P18
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Probing the impact of protein and ligand preparation procedures on chemotype enrichment in structure-based virtual screening using DEKOIS 2.0 benchmark sets
Authors
- Tamer M Ibrahim
- Matthias R Bauer
- Frank M Boeckler
- Content type: Poster presentation
- Open Access
- Published: 11 March 2014
- Article: P19
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HTS explorer
Authors (first, second and last of 4)
- Christoph Müller
- Isabella Feierberg
- Christian Tyrchan
- Content type: Poster presentation
- Open Access
- Published: 11 March 2014
- Article: P20
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Meat quality prediction using Raman spectroscopy and chemometrics
Authors (first, second and last of 4)
- Marius Nache
- Rico Scheier
- Bernd Hitzmann
- Content type: Poster presentation
- Open Access
- Published: 11 March 2014
- Article: P21
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Exploring and cataloguing the substrate space of prenyltransferases: automatic generation of SMARTS
Authors
- Jakub Gunera
- Peter Kolb
- Content type: Poster presentation
- Open Access
- Published: 11 March 2014
- Article: P22
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Interaction studies of Alzheimer's Cathepsin B protein with inhibitors in presence and absence of water
Authors
- Nitin Chitranshi
- Pushpendra K Tripathi
- Prahlad K Seth
- Content type: Poster presentation
- Open Access
- Published: 11 March 2014
- Article: P23