Volume 5, supplement issue 1, March 2013
8th German Conference on Chemoinformatics: 26 CIC-Workshop
- Issue editors
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- Uli Fechner
- Thomas Engel
- Frank Oellien
74 articles in this issue
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Get your chemistry right with KNIME
Authors
- Thorsten Meinl
- Gregory Landrum
- Content type: Oral presentation
- Open Access
- Published: 22 March 2013
- Article: F1
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Targeting protein dynamics in drug design
Authors
- Rebecca C Wade
- Content type: Oral presentation
- Open Access
- Published: 22 March 2013
- Article: O1
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Protein modeling and molecular dynamic studies of two new surfactant proteins
Authors (first, second and last of 5)
- Felix Rausch
- Wolfgang Brandt
- Friedrich Paulsen
- Content type: Oral presentation
- Open Access
- Published: 22 March 2013
- Article: O2
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The MoSGrid - e-science gateway: molecular simulations in a distributed computing environment
Authors (first, second and last of 20)
- Lars Packschies
- Georg Birkenheuer
- Andreas Zink
- Content type: Oral presentation
- Open Access
- Published: 22 March 2013
- Article: O3
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Reproducibility in cheminformatics and computational chemistry research: certainly we can do better than this
Authors
- Gregory A Landrum
- Content type: Oral presentation
- Open Access
- Published: 22 March 2013
- Article: O4
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Statistical modeling of value distributions of similarity coefficients in virtual screening and its application to predicting fingerprint search performance
Authors
- Martin Vogt
- Jürgen Bajorath
- Content type: Oral presentation
- Open Access
- Published: 22 March 2013
- Article: O5
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FMCS: a novel algorithm for the multiple MCS problem
Authors
- Andrew Dalke
- Janna Hastings
- Content type: Oral presentation
- Open Access
- Published: 22 March 2013
- Article: O6
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How to pick a winning team: approaches towards the selection of computationally derived protein structures for ensemble-based virtual screening
Authors (first, second and last of 4)
- Barbara Sander
- Oliver Korb
- Jonathan W Essex
- Content type: Oral presentation
- Open Access
- Published: 22 March 2013
- Article: O7
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Let's talk about rings
Authors
- Matthias Rarey
- Adrian Kolodzik
- Sascha Urbaczek
- Content type: Oral presentation
- Open Access
- Published: 22 March 2013
- Article: O8
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Toxicological knowledge discovery by mining emerging patterns from toxicity data
Authors (first, second and last of 5)
- Richard Sherhod
- Valerie J Gillet
- Jonathan D Vessey
- Content type: Oral presentation
- Open Access
- Published: 22 March 2013
- Article: O9
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Computational prediction of heterogeneous interface properties at the atomic level
Authors
- Lucio Colombi Ciacchi
- Content type: Oral presentation
- Open Access
- Published: 22 March 2013
- Article: O10
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Theoretical and experimental study of the pH-dependent interaction of amino acids and MFI-type zeolite
Authors (first, second and last of 4)
- Kai Stueckenschneider
- Juliane Merz
- Gerhard Schembecker
- Content type: Oral presentation
- Open Access
- Published: 22 March 2013
- Article: O11
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Quantifying the shifts in physicochemical property space introduced by the metabolism of small organic molecules
Authors (first, second and last of 11)
- Johannes Kirchmair
- Andrew Howlett
- Robert C Glen
- Content type: Oral presentation
- Open Access
- Published: 22 March 2013
- Article: O12
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3D-QSAR reloaded: Open3DALIGN meets COSMOsar3D
Authors
- Paolo Tosco
- Andreas Klamt
- Content type: Oral presentation
- Open Access
- Published: 22 March 2013
- Article: O13
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Dataset overlap density analysis
Authors
- Andreas H Göller
- Content type: Oral presentation
- Open Access
- Published: 22 March 2013
- Article: O14
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Efficient maximum common subgraph (MCS) searching of large chemical databases
Authors
- Roger A Sayle
- Jose Batista
- J Andrew Grant
- Content type: Oral presentation
- Open Access
- Published: 22 March 2013
- Article: O15
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International chemical identifier for chemical reactions
Authors
- Guenter Grethe
- Jonathan Goodman
- Chad Allen
- Content type: Oral presentation
- Open Access
- Published: 22 March 2013
- Article: O16
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Challenges in agrochemicals design
Authors
- KJ Schleifer
- Content type: Oral presentation
- Open Access
- Published: 22 March 2013
- Article: O17
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Development of a pharmacorphore model for pharmacological chaperones targeting mutant trafficking-deficient CNG channels
Authors (first, second and last of 7)
- Charlotta PI Schärfe
- Joachim Taeger
- Oliver Kohlbacher
- Content type: Oral presentation
- Open Access
- Published: 22 March 2013
- Article: O18
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Modifications to glucose-6-phosphate dehydrogenase for industrial applications: predictions and tests
Authors (first, second and last of 4)
- Martin Mosisch
- Jan Simons
- Andrew Torda
- Content type: Oral presentation
- Open Access
- Published: 22 March 2013
- Article: O19
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Molecular modelling studies of synthesized pentacyclo-undecane peptides as potential HIV-1 wild type C-SA protease inhibitors
Authors (first, second and last of 5)
- Bahareh Honarparvar
- Hendrik G Kruger
- Thavendran Govender
- Content type: Poster presentation
- Open Access
- Published: 22 March 2013
- Article: P1
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In silico characterization of the motor subunit of the e.coli. restriction-modification system EcoR1241
Authors (first, second and last of 4)
- Dhiraj Sinha
- Morteza Khabiri
- Rudiger Ettrich
- Content type: Poster presentation
- Open Access
- Published: 22 March 2013
- Article: P2
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TorsionAnalyzer: exploring conformational space
Authors
- Christin Schärfer
- Tanja Schulz-Gasch
- Matthias Rarey
- Content type: Poster presentation
- Open Access
- Published: 22 March 2013
- Article: P3
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Molecular simulations of peptides and proteins with Molecular Fragment Dynamics (MFD)
Authors (first, second and last of 5)
- Andreas Truszkowski
- Annamaria Fiethen
- Matthias Epple
- Content type: Poster presentation
- Open Access
- Published: 22 March 2013
- Article: P4
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Automatic docking of a small number of ligands into a large number of binding sites
Authors
- Alexander Kos
- Content type: Poster presentation
- Open Access
- Published: 22 March 2013
- Article: P5
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PREDator - a new structure-based approach for cross-reactivity predictions
Authors
- Florian Koelling
- Content type: Poster presentation
- Open Access
- Published: 22 March 2013
- Article: P6
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Towards a complete structure of the hERG channel
Authors (first, second and last of 4)
- Peter Schmidtke
- Ciantar Marine
- Pierre Ducrot
- Content type: Poster presentation
- Open Access
- Published: 22 March 2013
- Article: P7
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The importance of template choice in homology modeling. A 5-HT6R case study
Authors (first, second and last of 5)
- Krzysztof Rataj
- Jagna Witek
- Andrzej J Bojarski
- Content type: Poster presentation
- Open Access
- Published: 22 March 2013
- Article: P8
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Stability of single and double layer fibrillar amyloid-β oligomers
Authors
- Anna Kahler
- Anselm HC Horn
- Heinrich Sticht
- Content type: Poster presentation
- Open Access
- Published: 22 March 2013
- Article: P9
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Is the novel amyloid-β tetramer fold a stable conformation?
Authors
- Eileen Socher
- Anselm HC Horn
- Heinrich Sticht
- Content type: Poster presentation
- Open Access
- Published: 22 March 2013
- Article: P10
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ParaDockS - an open-source framework for molecular docking: implementation of target-class-specific scoring methods
Authors
- Michael Scharfe
- Martin Pippel
- Wolfgang Sippl
- Content type: Poster presentation
- Open Access
- Published: 22 March 2013
- Article: P11
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Nemesis - a molecular modeling package
Authors (first, second and last of 6)
- Jakub Štěpán
- Petr Kulhánek
- Jaroslav Koča
- Content type: Poster presentation
- Open Access
- Published: 22 March 2013
- Article: P12
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Simulation of transport processes and chemical reactions in building materials
Authors
- Carina Jehn
- Frank Schmidt-Döhl
- Content type: Poster presentation
- Open Access
- Published: 22 March 2013
- Article: P13
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Force-field-based minimizations of protein-ligand complexes in the blink of an eye
Authors
- Lennart Heinzerling
- Matthias Rarey
- Content type: Poster presentation
- Open Access
- Published: 22 March 2013
- Article: P14
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Annotating targets with pathways: extending approaches to mode of action analysis
Authors (first, second and last of 5)
- Sonia Liggi
- Alexios Koutsoukas
- Andreas Bender
- Content type: Poster presentation
- Open Access
- Published: 22 March 2013
- Article: P15
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Efficient mining of protein kinase structural data
Authors (first, second and last of 5)
- Stephen Maginn
- Andrew Henry
- Nels Thorsteinson
- Content type: Poster presentation
- Open Access
- Published: 22 March 2013
- Article: P16
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Combination of fingerprints and MCS-based (inSARa) networks for Structure-Activity-Relationship analysis
Authors
- Sabrina Wollenhaupt
- Knut Baumann
- Content type: Poster presentation
- Open Access
- Published: 22 March 2013
- Article: P17
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In silico target prediction: identification of on- and off-targets for crop protection agents
Authors
- Rucha K Chiddarwar
- Andreas Bender
- Sebastian Rohrer
- Content type: Poster presentation
- Open Access
- Published: 22 March 2013
- Article: P18
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A next-generation chemistry database cartridge
Authors
- Wolf D Ihlenfeldt
- Content type: Poster presentation
- Open Access
- Published: 22 March 2013
- Article: P19
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Taking the PubChem web sketcher to the next level
Authors
- Wolf D Ihlenfeldt
- Content type: Poster presentation
- Open Access
- Published: 22 March 2013
- Article: P20
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MycPermCheck: the Mycobacterium tuberculosispermeability prediction tool for small molecules
Authors (first, second and last of 4)
- Benjamin Merget
- David Zilian
- Christoph A Sotriffer
- Content type: Poster presentation
- Open Access
- Published: 22 March 2013
- Article: P21
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Analysis of naphthoquinone derivatives as topoisomerase I inhibitors using fragment based QSAR
Authors (first, second and last of 5)
- Bastikar Virupaksha
- Gupte Alpana
- Desideri Alessandro
- Content type: Poster presentation
- Open Access
- Published: 22 March 2013
- Article: P22
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Chemogenomic approach to increase accuracy of QSAR modeling of inhibition activity against five major P450 isoforms
Authors (first, second and last of 4)
- Sergii Novotarskyi
- Iurii Sushko
- Igor V Tetko
- Content type: Poster presentation
- Open Access
- Published: 22 March 2013
- Article: P23
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Revised classification of kinases based on bioactivity data: the importance of data density and choice of visualization
Authors (first, second and last of 5)
- Shardul Paricharak
- Tom Klenka
- Andreas Bender
- Content type: Poster presentation
- Open Access
- Published: 22 March 2013
- Article: P24
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The influence of hashed fingerprints density on the machine learning methods performance
Authors
- Sabina Smusz
- Rafał Kurczab
- Andrzej J Bojarski
- Content type: Poster presentation
- Open Access
- Published: 22 March 2013
- Article: P25
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Relating GPCRs pharmacological space based on ligands chemical similarities
Authors (first, second and last of 5)
- Alexios Koutsoukas
- Rubben Torella
- Robert C Glen
- Content type: Poster presentation
- Open Access
- Published: 22 March 2013
- Article: P26
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Combining SFCscore with Random Forests leads to improved affinity prediction for protein-ligand complexes
Authors
- D Zilian
- CA Sotriffer
- Content type: Poster presentation
- Open Access
- Published: 22 March 2013
- Article: P27
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Application of Structural Interaction Fingerpints (SIFts) into post-docking analysis - insight into activity and selectivity
Authors (first, second and last of 6)
- Jagna Witek
- Krzysztof Rataj
- Andrzej J Bojarski
- Content type: Poster presentation
- Open Access
- Published: 22 March 2013
- Article: P28
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Extended graph-based models for enhanced similarity retrieval in Cavbase
Authors (first, second and last of 5)
- Timo Krotzky
- Thomas Fober
- Eyke Hüllermeier
- Content type: Poster presentation
- Open Access
- Published: 22 March 2013
- Article: P29