Volume 4, supplement issue 1, December 2012
7th German Conference on Chemoinformatics: 25 CIC-Workshop
- Issue editors
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- Frank Oellien
- Uli Fechner
- Thomas Engel
91 articles in this issue
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TRAVIS - a free analyzer and visualizer for Monte Carlo and molecular dynamics trajectories
Authors
- Martin Brehm
- Barbara Kirchner
- Content type: Oral presentation
- Open Access
- Published: 01 May 2012
- Article: F1
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What's new in KNIME?
Authors
- Thorsten Meinl
- Content type: Oral presentation
- Open Access
- Published: 01 May 2012
- Article: F2
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ParaDockS – an open source framework for molecular docking
Authors (first, second and last of 4)
- Martin Pippel
- Michael Scharfe
- Wolfgang Sippl
- Content type: Oral presentation
- Open Access
- Published: 01 May 2012
- Article: F3
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Packaging free software chemistry programs in Debian GNU/Linux: past, present and future
Authors
- Michael Banck
- Content type: Oral presentation
- Open Access
- Published: 01 May 2012
- Article: F4
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25 years of CIC – achievements and future goals
Authors
- Johann Gasteiger
- Content type: Oral presentation
- Open Access
- Published: 01 May 2012
- Article: O1
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CADDSuite – a workflow-enabled suite of open-source tools for drug discovery
Authors
- Oliver Kohlbacher
- Content type: Oral presentation
- Open Access
- Published: 01 May 2012
- Article: O2
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A computational method to facilitate structure-activity relationship transfer
Authors
- Anne Mai Wassermann
- Jürgen Bajorath
- Content type: Oral presentation
- Open Access
- Published: 01 May 2012
- Article: O3
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Aligning chemical structure diagrams with local search
Authors
- Matthias Hilbig
- Matthias Rarey
- Content type: Oral presentation
- Open Access
- Published: 01 May 2012
- Article: O4
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Chemoinformatics in drug development
Authors
- Colin R Groom
- Content type: Oral presentation
- Open Access
- Published: 01 May 2012
- Article: O5
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Winnow based identification of potent hERG inhibitors in silico: comparative assessment on different datasets
Authors
- Richard L Marchese Robinson
- Robert C Glen
- John BO Mitchell
- Content type: Oral presentation
- Open Access
- Published: 01 May 2012
- Article: O6
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Putting the available chemical space to the fingertips of our scientists
Authors
- Jörg Degen
- Mark Rogers-Evans
- Daniel Stoffler
- Content type: Oral presentation
- Open Access
- Published: 01 May 2012
- Article: O7
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Quantifying intrinsic chemical reactivity of molecular structural features for protein binding and reactive toxicity, using the MOSES chemoinformatics system
Authors (first, second and last of 10)
- Johannes AH Schwöbel
- Bruno Bienfait
- Mark TD Cronin
- Content type: Oral presentation
- Open Access
- Published: 01 May 2012
- Article: O8
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Non-continuum solvation using the EC-RISM method applied to predict tautomer ratios, pKa and enantiomeric excess of alkylation reactions
Authors
- Jochen Heil
- Roland Frach
- Stefan M Kast
- Content type: Oral presentation
- Open Access
- Published: 01 May 2012
- Article: O9
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Integrating logic-based machine learning and virtual screening to discover new drugs
Authors
- Christopher R Reynolds
- Michael JE Sternberg
- Content type: Oral presentation
- Open Access
- Published: 01 May 2012
- Article: O10
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Design of dual ligands using excessive pharmacophore query alignment
Authors (first, second and last of 9)
- Daniel Moser
- Joanna Wisniewska
- Ewgenij Proschak
- Content type: Oral presentation
- Open Access
- Published: 01 May 2012
- Article: O11
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Text-based similarity searching for hit- and lead-candidate identification
Authors
- Volker Hähnke
- Content type: Oral presentation
- Open Access
- Published: 01 May 2012
- Article: O12
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Understanding nanostructure formation from first principles
Authors
- Eva Rauls
- Content type: Oral presentation
- Open Access
- Published: 01 May 2012
- Article: O13
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Solvent-screening and co-crystal screening for drug development with COSMO-RS
Authors
- A Klamt
- Content type: Oral presentation
- Open Access
- Published: 01 May 2012
- Article: O14
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Assessment of a variety of dispersion-corrected density functional theory calculations used in molecular crystal structure prediction
Authors
- Bernd Doser
- Marcus A Neumann
- Content type: Oral presentation
- Open Access
- Published: 01 May 2012
- Article: O15
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Semantics vs. statistics in chemical markup
Authors
- Colin Batchelor
- Content type: Oral presentation
- Open Access
- Published: 01 May 2012
- Article: O16
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ChemProspector and generic structures: advanced mining and searching of chemical content
Authors (first, second and last of 6)
- Valentina Eigner-Pitto
- Josef Eiblmaier
- Peter Loew
- Content type: Oral presentation
- Open Access
- Published: 01 May 2012
- Article: O17
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Recent and current developments in handling Markush structures from chemical patents
Authors
- John M Barnard
- Geoff M Downs
- Content type: Oral presentation
- Open Access
- Published: 01 May 2012
- Article: O18
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Computational chemistry in pharmaceutical research – where do we stand after 25 years?
Authors
- Herbert Köppen
- Content type: Oral presentation
- Open Access
- Published: 01 May 2012
- Article: O19
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Ligand based lead generation - considering chemical accessibility in rescaffolding approaches via BROOD
Authors (first, second and last of 4)
- Li-hsing Wang
- Andreas Evers
- Thorsten Naumann
- Content type: Oral presentation
- Open Access
- Published: 01 May 2012
- Article: O20
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Blocking protein-protein interactions: the identification of repetitive turn structures as basis for inhibitor building blocks
Authors
- Oliver Koch
- Content type: Oral presentation
- Open Access
- Published: 01 May 2012
- Article: O21
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Improvements in docking scoring functions: the physics-based perspective
Authors
- Xavier Barril
- Content type: Oral presentation
- Open Access
- Published: 01 May 2012
- Article: O22
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Molecular modeling of lipid drug formulations
Authors (first, second and last of 5)
- Woldeamanuel A Birru
- Dallas B Warren
- David K Chalmers
- Content type: Oral presentation
- Open Access
- Published: 01 May 2012
- Article: O23
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Virtual screening for plant PARP inhibitors – what can be learned from human PARP inhibitors?
Authors (first, second and last of 4)
- Peter-Paul Heym
- Wolfgang Brandt
- Hans-Joachim Niclas
- Content type: Oral presentation
- Open Access
- Published: 01 May 2012
- Article: O24
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Virtual screening and in silico design of novel inhibitors of bacterial lectins
Authors
- Jan Alán
- Petr Kulhánek
- Jaroslav Koča
- Content type: Poster presentation
- Open Access
- Published: 01 May 2012
- Article: P1
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DecoyFinder, a tool for finding decoy molecules
Authors
- Cereto Massagué Adrià
- S Garcia-Vallvé
- G Pujadas
- Content type: Poster presentation
- Open Access
- Published: 01 May 2012
- Article: P2
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Targeting protein-protein interactions using methods of cheminformatics
Authors
- Art Cherkasov
- Content type: Poster presentation
- Open Access
- Published: 01 May 2012
- Article: P3
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Design of multi-target activity landscapes that capture hierarchical activity cliff distributions
Authors
- Dilyana Dimova
- Jürgen Bajorath
- Content type: Poster presentation
- Open Access
- Published: 01 May 2012
- Article: P4
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Structured chemical class definitions and automated matching for chemical ontology evolution
Authors (first, second and last of 5)
- Lian Duan
- Janna Hastings
- Christoph Steinbeck
- Content type: Poster presentation
- Open Access
- Published: 01 May 2012
- Article: P5
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Structure and thermodynamics of nonaqueous solvation by integral equation theory
Authors
- Roland Frach
- Jochen Heil
- Stefan M Kast
- Content type: Poster presentation
- Open Access
- Published: 01 May 2012
- Article: P6
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Assessment of a probabilistic framework for combining structure- and ligand-based virtual screening
Authors (first, second and last of 4)
- Simone Fulle
- Stuart M Armstrong
- Garrett M Morris
- Content type: Poster presentation
- Open Access
- Published: 01 May 2012
- Article: P7
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Applying the unified pH scale: absolute acidities in the gas phase and anchor points for eleven representative liquid media
Authors (first, second and last of 4)
- Sascha K Goll
- Daniel Himmel
- Ingo Krossing
- Content type: Poster presentation
- Open Access
- Published: 01 May 2012
- Article: P8
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Mechanistic DFT studies – helicate-type complexes with different alcylic spacers
Authors
- Verena Gossen
- Gerhard Raabe
- Markus Albrecht
- Content type: Poster presentation
- Open Access
- Published: 01 May 2012
- Article: P9
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Tabu search based global optimization algorithms for problems in computational chemistry
Authors (first, second and last of 4)
- Christoph Grebner
- Johannes Becker
- Bernd Engels
- Content type: Poster presentation
- Open Access
- Published: 01 May 2012
- Article: P10
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Synergistic approach of structure-based and ligand-based drug design for the development of selective cannabinod receptor ligands
Authors
- Robert Günther
- Peter Brust
- Content type: Poster presentation
- Open Access
- Published: 01 May 2012
- Article: P11
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Potency-directed similarity searching using support vector machines
Authors
- Kathrin Heikamp
- Anne M Wassermann
- Jürgen Bajorath
- Content type: Poster presentation
- Open Access
- Published: 01 May 2012
- Article: P12
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Status of the InChI algorithm and InChI trust
Authors
- Stephen Heller
- Content type: Poster presentation
- Open Access
- Published: 01 May 2012
- Article: P13
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A flexible-hydrogen interaction model for protein-ligand docking
Authors (first, second and last of 4)
- Angela M Henzler
- Sascha Urbaczek
- Matthias Rarey
- Content type: Poster presentation
- Open Access
- Published: 01 May 2012
- Article: P14
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Revisiting the dataflow principle for chemical information processing
Authors
- Wolf D Ihlenfeldt
- Content type: Poster presentation
- Open Access
- Published: 01 May 2012
- Article: P15
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Asymmetric transfer hydrogenation of imines and ketones using chiral Ru(II)Cl(η6-p-cymene)[(S,S)-N-TsDPEN] catalyst: a computational study
Authors (first, second and last of 4)
- Petr Kačer
- Jiří Václavík
- Marek Kuzma
- Content type: Poster presentation
- Open Access
- Published: 01 May 2012
- Article: P16
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http://Mcule.com: a public web service for drug discovery
Authors
- Robert Kiss
- Mark Sandor
- Ferenc A Szalai
- Content type: Poster presentation
- Open Access
- Published: 01 May 2012
- Article: P17
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COSMOsim3D for drug-similarity, alignment, and molecular field analysis
Authors
- Andreas Klamt
- Karin Wichmann
- Michael Thormann
- Content type: Poster presentation
- Open Access
- Published: 01 May 2012
- Article: P18
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Large scale chemical patent mining with UIMA and UNICORE
Authors (first, second and last of 4)
- Alexander Klenner
- Sandra Bergmann
- Mathilde Romberg
- Content type: Poster presentation
- Open Access
- Published: 01 May 2012
- Article: P19
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CavKAHYBRID– between hard spheres and Gaussians
Authors
- Florian Koelling
- Knut Baumann
- Content type: Poster presentation
- Open Access
- Published: 01 May 2012
- Article: P20
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MoSGrid: efficient data management and a standardized data exchange format for molecular simulations in a grid environment
Authors (first, second and last of 18)
- Georg Birkenheuer
- Dirk Blunk
- Martin Wewior
- Content type: Poster presentation
- Open Access
- Published: 01 May 2012
- Article: P21