Volume 13, issue 1, January 2018
27 articles in this issue
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Response to Martin and colleagues: mitochondria do not boost the bioenergetic capacity of eukaryotic cells
Authors
- Michael Lynch
- Georgi K. Marinov
- Content type: Commentary
- Open Access
- Published: 29 November 2018
- Article: 26
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Reconstruction of endosomal organization and function by a combination of ODE and agent-based modeling strategies
Authors (first, second and last of 5)
- Luis S. Mayorga
- Ignacio Cebrian
- Josep Bassaganya-Riera
- Content type: Research
- Open Access
- Published: 23 November 2018
- Article: 25
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Darwinian selection of host and bacteria supports emergence of Lamarckian-like adaptation of the system as a whole
Authors (first, second and last of 4)
- Dino Osmanovic
- David A. Kessler
- Yoav Soen
- Content type: Research
- Open Access
- Published: 26 October 2018
- Article: 24
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Sense-antisense gene overlap is probably a cause for retaining the few introns in Giardia genome and the implications
Authors (first, second and last of 6)
- Min Xue
- Bing Chen
- Jianfan Wen
- Content type: Research
- Open Access
- Published: 17 October 2018
- Article: 23
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Assessment of urban microbiome assemblies with the help of targeted in silico gold standards
Authors
- Samuel M. Gerner
- Thomas Rattei
- Alexandra B. Graf
- Content type: Research
- Open Access
- Published: 12 October 2018
- Article: 22
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Elusive data underlying debate at the prokaryote-eukaryote divide
Authors (first, second and last of 5)
- Marie Gerlitz
- Michael Knopp
- William F. Martin
- Content type: Comment
- Open Access
- Published: 03 October 2018
- Article: 21
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Predicting clinical outcomes in neuroblastoma with genomic data integration
Authors (first, second and last of 5)
- Ilyes Baali
- D Alp Emre Acar
- Hilal Kazan
- Content type: Research
- Open Access
- Published: 27 September 2018
- Article: 20
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Molecular mechanisms of the juvenile form of Batten disease: important role of MAPK signaling pathways (ERK1/ERK2, JNK and p38) in pathogenesis of the malady
Authors (first, second and last of 4)
- Elena K. Shematorova
- Dmitry G. Shpakovski
- George V. Shpakovski
- Content type: Hypothesis
- Open Access
- Published: 25 September 2018
- Article: 19
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Is pre-Darwinian evolution plausible?
Authors
- Marc Tessera
- Content type: Review
- Open Access
- Published: 21 September 2018
- Article: 18
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Integration of multiple types of genetic markers for neuroblastoma may contribute to improved prediction of the overall survival
Authors (first, second and last of 5)
- Aneta Polewko-Klim
- Wojciech Lesiński
- Witold R. Rudnicki
- Content type: Research
- Open Access
- Published: 20 September 2018
- Article: 17
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Models of cell signaling uncover molecular mechanisms of high-risk neuroblastoma and predict disease outcome
Authors (first, second and last of 5)
- Marta R. Hidalgo
- Alicia Amadoz
- JoaquÃn Dopazo
- Content type: Research
- Open Access
- Published: 22 August 2018
- Article: 16
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MetaBinG2: a fast and accurate metagenomic sequence classification system for samples with many unknown organisms
Authors (first, second and last of 6)
- Yuyang Qiao
- Ben Jia
- Chaochun Wei
- Content type: Research
- Open Access
- Published: 22 August 2018
- Article: 15
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Accumulation of potential driver genes with genomic alterations predicts survival of high-risk neuroblastoma patients
Authors (first, second and last of 6)
- Chen Suo
- Wenjiang Deng
- Yudi Pawitan
- Content type: Research
- Open Access
- Published: 16 July 2018
- Article: 14
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Modeling protein folding in vivo
Authors
- Irina Sorokina
- Arcady Mushegian
- Content type: Opinion
- Open Access
- Published: 06 July 2018
- Article: 13
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Predicting clinical outcome of neuroblastoma patients using an integrative network-based approach
Authors (first, second and last of 8)
- Léon-Charles Tranchevent
- Petr V. Nazarov
- Francisco Azuaje
- Content type: Research
- Open Access
- Published: 07 June 2018
- Article: 12
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Predicting survival times for neuroblastoma patients using RNA-seq expression profiles
Authors (first, second and last of 4)
- Tyler Grimes
- Alejandro R. Walker
- Somnath Datta
- Content type: Research
- Open Access
- Published: 30 May 2018
- Article: 11
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Unraveling bacterial fingerprints of city subways from microbiome 16S gene profiles
Authors (first, second and last of 4)
- Alejandro R. Walker
- Tyler L. Grimes
- Susmita Datta
- Content type: Research
- Open Access
- Published: 22 May 2018
- Article: 10
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Profiling microbial strains in urban environments using metagenomic sequencing data
Authors (first, second and last of 6)
- Moreno Zolfo
- Francesco Asnicar
- Nicola Segata
- Content type: Research
- Open Access
- Published: 09 May 2018
- Article: 9
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Use of designed sequences in protein structure recognition
Authors (first, second and last of 4)
- Gayatri Kumar
- Richa Mudgal
- Sankaran Sandhya
- Content type: Research
- Open Access
- Published: 09 May 2018
- Article: 8
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Conservation of the separase regulatory domain
Authors
- Michael Melesse
- Joshua N. Bembenek
- Igor B. Zhulin
- Content type: Discovery notes
- Open Access
- Published: 27 April 2018
- Article: 7
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MEGAN-LR: new algorithms allow accurate binning and easy interactive exploration of metagenomic long reads and contigs
Authors (first, second and last of 7)
- Daniel H. Huson
- Benjamin Albrecht
- Rohan B. H. Williams
- Content type: Research
- Open Access
- Published: 20 April 2018
- Article: 6
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Multi-omics integration for neuroblastoma clinical endpoint prediction
Authors (first, second and last of 6)
- Margherita Francescatto
- Marco Chierici
- Cesare Furlanello
- Content type: Research
- Open Access
- Published: 03 April 2018
- Article: 5
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Prevalence of loss-of-function alleles does not correlate with lifetime fecundity and other life-history traits in metazoans
Authors
- Aleksandra V. Bezmenova
- Georgii A. Bazykin
- Alexey S. Kondrashov
- Content type: Research
- Open Access
- Published: 02 March 2018
- Article: 4
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Genes sharing the protein family domain decrease the performance of classification with RNA-seq genomic signatures
Authors (first, second and last of 4)
- Anna Leśniewska
- Joanna Zyprych-Walczak
- Michal J. Okoniewski
- Content type: Research
- Open Access
- Published: 21 February 2018
- Article: 3
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Finite-size effects in transcript sequencing count distribution: its power-law correction necessarily precedes downstream normalization and comparative analysis
Authors (first, second and last of 5)
- Wing-Cheong Wong
- Hong-kiat Ng
- Frank Eisenhaber
- Content type: Research
- Open Access
- Published: 12 February 2018
- Article: 2
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Efficient differentially private learning improves drug sensitivity prediction
Authors (first, second and last of 5)
- Antti Honkela
- Mrinal Das
- Samuel Kaski
- Content type: Research
- Open Access
- Published: 06 February 2018
- Article: 1
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