Volume 10, issue 1, December 2015
74 articles in this issue
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PEPstrMOD: structure prediction of peptides containing natural, non-natural and modified residues
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Quantitative proteomics signature profiling based on network contextualization
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A novel RING finger in the C-terminal domain of the coatomer protein α-COP
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What can ecosystems learn? Expanding evolutionary ecology with learning theory
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A principle of organization which facilitates broad Lamarckian-like adaptations by improvisation
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Bacterial calpains and the evolution of the calpain (C2) family of peptidases
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Evolution of an archaeal virus nucleocapsid protein from the CRISPR-associated Cas4 nuclease
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Highly divergent ancient gene families in metagenomic samples are compatible with additional divisions of life
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Eukaryotic G protein-coupled receptors as descendants of prokaryotic sodium-translocating rhodopsins
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Modeling epigenetic regulation of PRC1 protein accumulation in the cell cycle
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The human disease network in terms of dysfunctional regulatory mechanisms
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MicroRNA-derived network analysis of differentially methylated genes in schizophrenia, implicating GABA receptor B1 [GABBR1] and protein kinase B [AKT1]
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Putative adaptive inter-slope divergence of transposon frequency in fruit flies (Drosophila melanogaster) at “Evolution Canyon”, Mount Carmel, Israel
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Inferring synthetic lethal interactions from mutual exclusivity of genetic events in cancer
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Variation in the ribosome interacting loop of the Sec61α from Giardia lamblia
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Pan-genomic analysis to redefine species and subspecies based on quantum discontinuous variation: the Klebsiella paradigm
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TMFoldWeb: a web server for predicting transmembrane protein fold class
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KGCAK: a K-mer based database for genome-wide phylogeny and complexity evaluation
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Why the Central Dogma: on the nature of the great biological exclusion principle
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Age-driven modulation of tRNA-derived fragments in Drosophila and their potential targets
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Lack of population differentiation patterns of previously identified putatively adaptive transposable element insertions at microgeographic scales
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“Phylogenetic and evolutionary analysis of functional divergence among Gamma glutamyl transpeptidase (GGT) subfamilies”
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Comparative genomic analysis of the WRKY III gene family in populus, grape, arabidopsis and rice
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Was the evolutionary road towards adaptive immunity paved with endothelium?
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Microarray experiments and factors which affect their reliability
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Tradeoff between robustness and elaboration in carotenoid networks produces cycles of avian color diversification
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De novo transcriptome assembly and analysis of Sf21 cells using illumina paired end sequencing
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Experiences with workflows for automating data-intensive bioinformatics
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A membrane computing simulator of trans-hierarchical antibiotic resistance evolution dynamics in nested ecological compartments (ARES)
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Prediction of problematic complexes from PPI networks: sparse, embedded, and small complexes
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dissectHMMER: a HMMER-based score dissection framework that statistically evaluates fold-critical sequence segments for domain fold similarity
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De-DUFing the DUFs: Deciphering distant evolutionary relationships of Domains of Unknown Function using sensitive homology detection methods
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The UBR-box and its relationship to binuclear RING-like treble clef zinc fingers
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The distribution, diversity, and importance of 16S rRNA gene introns in the order Thermoproteales
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Design principles for cancer therapy guided by changes in complexity of protein-protein interaction networks
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Modeling of interaction between cytochrome c and the WD domains of Apaf-1: bifurcated salt bridges underlying apoptosome assembly
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Molecular complementarity between simple, universal molecules and ions limited phenotype space in the precursors of cells
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Cooperation and selfishness both occur during molecular evolution
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