Volume 8, issue 9, September 2007
31 articles in this issue
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Global 'worming'
Authors
- Sreekanth H Chalasani
- Evan H Feinberg
- Massimo A Hilliard
- Content type: Meeting report
- Published: 13 September 2007
- Article: 314
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The protamine family of sperm nuclear proteins
Authors
- Rod Balhorn
- Content type: Protein family review
- Published: 26 September 2007
- Article: 227
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The monkey's perspective
Authors
- Todd R Disotell
- Anthony J Tosi
- Content type: Minireview
- Published: 26 September 2007
- Article: 226
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Hidden weapons of microbial destruction in plant genomes
Authors
- John M Manners
- Content type: Minireview
- Published: 26 September 2007
- Article: 225
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Genomic analysis reveals the major driving forces of bacterial life in the rhizosphere
Authors (first, second and last of 5)
- Miguel A Matilla
- Manuel Espinosa-Urgel
- MarÃa Isabel Ramos-González
- Content type: Research
- Open Access
- Published: 04 September 2007
- Article: R179
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Functional constraint and small insertions and deletions in the ENCODE regions of the human genome
Authors (first, second and last of 6)
- Taane G Clark
- Toby Andrew
- David J Balding
- Content type: Research
- Open Access
- Published: 04 September 2007
- Article: R180
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Dynamic cumulative activity of transcription factors as a mechanism of quantitative gene regulation
Authors (first, second and last of 4)
- Feng He
- Jan Buer
- Rudi Balling
- Content type: Research
- Open Access
- Published: 04 September 2007
- Article: R181
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Metabolic peculiarities of Aspergillus niger disclosed by comparative metabolic genomics
Authors (first, second and last of 4)
- Jibin Sun
- Xin Lu
- An Ping Zeng
- Content type: Research
- Open Access
- Published: 04 September 2007
- Article: R182
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The DAVID Gene Functional Classification Tool: a novel biological module-centric algorithm to functionally analyze large gene lists
Authors (first, second and last of 10)
- Da Wei Huang
- Brad T Sherman
- Richard A Lempicki
- Content type: Software
- Open Access
- Published: 04 September 2007
- Article: R183
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Transcriptomic and phenotypic analysis of murine embryonic stem cell derived BMP2+lineage cells: an insight into mesodermal patterning
Authors (first, second and last of 14)
- Michael Xavier Doss
- Shuhua Chen
- Agapios Sachinidis
- Content type: Research
- Open Access
- Published: 04 September 2007
- Article: R184
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Cross-species cluster co-conservation: a new method for generating protein interaction networks
Authors (first, second and last of 5)
- Anis Karimpour-Fard
- Corrella S Detweiler
- Ryan T Gill
- Content type: Method
- Open Access
- Published: 05 September 2007
- Article: R185
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Coverage and error models of protein-protein interaction data by directed graph analysis
Authors (first, second and last of 5)
- Tony Chiang
- Denise Scholtens
- Wolfgang Huber
- Content type: Method
- Open Access
- Published: 10 September 2007
- Article: R186
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The LeFE algorithm: embracing the complexity of gene expression in the interpretation of microarray data
Authors (first, second and last of 4)
- Gabriel S Eichler
- Mark Reimers
- John N Weinstein
- Content type: Method
- Open Access
- Published: 10 September 2007
- Article: R187
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The embryonic muscle transcriptome of Caenorhabditis elegans
Authors (first, second and last of 8)
- Rebecca M Fox
- Joseph D Watson
- David M Miller III
- Content type: Research
- Open Access
- Published: 12 September 2007
- Article: R188
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Social regulation of gene expression in human leukocytes
Authors (first, second and last of 6)
- Steve W Cole
- Louise C Hawkley
- John T Cacioppo
- Content type: Research
- Open Access
- Published: 13 September 2007
- Article: R189
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DetectiV: visualization, normalization and significance testing for pathogen-detection microarray data
Authors (first, second and last of 5)
- Michael Watson
- Juliet Dukes
- Paul Britton
- Content type: Software
- Open Access
- Published: 14 September 2007
- Article: R190
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Characterization of heterotypic interaction effects in vitro to deconvolute global gene expression profiles in cancer
Authors (first, second and last of 6)
- Martin Buess
- Dimitry SA Nuyten
- Patrick O Brown
- Content type: Research
- Open Access
- Published: 14 September 2007
- Article: R191
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InSite: a computational method for identifying protein-protein interaction binding sites on a proteome-wide scale
Authors (first, second and last of 6)
- Haidong Wang
- Eran Segal
- Daphne Koller
- Content type: Method
- Open Access
- Published: 14 September 2007
- Article: R192
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Identification of novel stem cell markers using gap analysis of gene expression data
Authors
- Paul M Krzyzanowski
- Miguel A Andrade-Navarro
- Content type: Method
- Open Access
- Published: 17 September 2007
- Article: R193
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Genome-wide investigation reveals pathogen-specific and shared signatures in the response of Caenorhabditis elegansto infection
Authors (first, second and last of 5)
- Daniel Wong
- Daphne Bazopoulou
- Jonathan J Ewbank
- Content type: Research
- Open Access
- Published: 17 September 2007
- Article: R194
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Identification of novel regulatory factor X (RFX) target genes by comparative genomics in Drosophila species
Authors (first, second and last of 9)
- Anne Laurençon
- Raphaëlle Dubruille
- Bénédicte Durand
- Content type: Research
- Open Access
- Published: 17 September 2007
- Article: R195
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Drawing the tree of eukaryotic life based on the analysis of 2,269 manually annotated myosins from 328 species
Authors
- Florian Odronitz
- Martin Kollmar
- Content type: Research
- Open Access
- Published: 18 September 2007
- Article: R196
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Exploration of the omics evidence landscape: adding qualitative labels to predicted protein-protein interactions
Authors
- Vera van Noort
- Berend Snel
- Martijn A Huynen
- Content type: Research
- Open Access
- Published: 19 September 2007
- Article: R197
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Evolutionary dynamics of eukaryotic selenoproteomes: large selenoproteomes may associate with aquatic life and small with terrestrial life
Authors (first, second and last of 6)
- Alexey V Lobanov
- Dmitri E Fomenko
- Vadim N Gladyshev
- Content type: Research
- Open Access
- Published: 19 September 2007
- Article: R198
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Rooting the eutherian tree: the power and pitfalls of phylogenomics
Authors
- Hidenori Nishihara
- Norihiro Okada
- Masami Hasegawa
- Content type: Research
- Open Access
- Published: 21 September 2007
- Article: R199
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Atherosclerosis and liver inflammation induced by increased dietary cholesterol intake: a combined transcriptomics and metabolomics analysis
Authors (first, second and last of 17)
- Robert Kleemann
- Lars Verschuren
- Teake Kooistra
- Content type: Research
- Open Access
- Published: 24 September 2007
- Article: R200
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Reversible and permanent effects of tobacco smoke exposure on airway epithelial gene expression
Authors (first, second and last of 6)
- Jennifer Beane
- Paola Sebastiani
- Avrum Spira
- Content type: Research
- Open Access
- Published: 25 September 2007
- Article: R201
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Regional differences in dosage compensation on the chicken Z chromosome
Authors
- Esther Melamed
- Arthur P Arnold
- Content type: Research
- Open Access
- Published: 27 September 2007
- Article: R202
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A case study of the reproducibility of transcriptional reporter cell-based RNAi screens in Drosophila
Authors (first, second and last of 7)
- Ramanuj DasGupta
- Kent Nybakken
- Norbert Perrimon
- Content type: Method
- Open Access
- Published: 28 September 2007
- Article: R203