Truvari: refined structural variant comparison preserves allelic diversity
Authors (first, second and last of 5)
Volume 23, issue 1, December 2022
271 articles in this issue
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NetAct: a computational platform to construct core transcription factor regulatory networks using gene activity
Authors (first, second and last of 9)
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Clustering Deviation Index (CDI): a robust and accurate internal measure for evaluating scRNA-seq data clustering
Authors (first, second and last of 7)
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Implicating genes, pleiotropy, and sexual dimorphism at blood lipid loci through multi-ancestry meta-analysis
Authors (first, second and last of 539)
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Biology-inspired data-driven quality control for scientific discovery in single-cell transcriptomics
Authors (first, second and last of 4)
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Saturation-scale functional evidence supports clinical variant interpretation in Lynch syndrome
Authors (first, second and last of 6)
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Parallel single-cell and bulk transcriptome analyses reveal key features of the gastric tumor microenvironment
Authors (first, second and last of 15)
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Large-scale genomic and transcriptomic profiles of rice hybrids reveal a core mechanism underlying heterosis
Authors (first, second and last of 28)
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Canalization of genome-wide transcriptional activity in Arabidopsis thaliana accessions by MET1-dependent CG methylation
Authors (first, second and last of 7)
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Single-cell transcriptome reveals dominant subgenome expression and transcriptional response to heat stress in Chinese cabbage
Authors (first, second and last of 11)
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Exploring functional protein covariation across single cells using nPOP
Authors (first, second and last of 5)
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G-quadruplexes sense natural porphyrin metabolites for regulation of gene transcription and chromatin landscapes
Authors (first, second and last of 16)
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Automated assembly scaffolding using RagTag elevates a new tomato system for high-throughput genome editing
Authors (first, second and last of 10)
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STRling: a k-mer counting approach that detects short tandem repeat expansions at known and novel loci
Authors (first, second and last of 14)
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Spatial omics technologies at multimodal and single cell/subcellular level
Authors (first, second and last of 7)
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Structural variant analysis of a cancer reference cell line sample using multiple sequencing technologies
Authors (first, second and last of 39)
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Distance-dependent inhibition of translation initiation by downstream out-of-frame AUGs is consistent with a Brownian ratchet process of ribosome scanning
Authors (first, second and last of 5)
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The mutational dynamics of short tandem repeats in large, multigenerational families
Authors (first, second and last of 4)
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New roles for AP-1/JUNB in cell cycle control and tumorigenic cell invasion via regulation of cyclin E1 and TGF-β2
Authors (first, second and last of 14)
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Pan-cancer surveys indicate cell cycle-related roles of primate-specific genes in tumors and embryonic cerebrum
Authors (first, second and last of 12)
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Pathogen genomics study of an early medieval community in Germany reveals extensive co-infections
Authors (first, second and last of 16)
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METTL4-mediated nuclear N6-deoxyadenosine methylation promotes metastasis through activating multiple metastasis-inducing targets
Authors (first, second and last of 16)
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SIEVE: joint inference of single-nucleotide variants and cell phylogeny from single-cell DNA sequencing data
Authors (first, second and last of 10)
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MoDLE: high-performance stochastic modeling of DNA loop extrusion interactions
Authors (first, second and last of 5)
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Cross-regulome profiling of RNA polymerases highlights the regulatory role of polymerase III on mRNA transcription by maintaining local chromatin architecture
Authors (first, second and last of 8)
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The genetic and biochemical determinants of mRNA degradation rates in mammals
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m6A RNA methylation impairs gene expression variability and reproductive thermotolerance in Arabidopsis
Authors (first, second and last of 7)
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Parallel evolution of amphioxus and vertebrate small-scale gene duplications
Authors (first, second and last of 14)
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metaMIC: reference-free misassembly identification and correction of de novo metagenomic assemblies
Authors (first, second and last of 6)
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MEDICC2: whole-genome doubling aware copy-number phylogenies for cancer evolution
Authors (first, second and last of 13)
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Retained introns in long RNA-seq reads are not reliably detected in sample-matched short reads
Authors (first, second and last of 5)
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Gene flow and introgression are pervasive forces shaping the evolution of bacterial species
Authors (first, second and last of 4)
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Personalized genome assembly for accurate cancer somatic mutation discovery using tumor-normal paired reference samples
Authors (first, second and last of 12)
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Lineage abundance estimation for SARS-CoV-2 in wastewater using transcriptome quantification techniques
Authors (first, second and last of 28)
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Evolution and function of developmentally dynamic pseudogenes in mammals
Authors (first, second and last of 4)
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Mapping responsive genomic elements to heat stress in a maize diversity panel
Authors (first, second and last of 6)
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Comprehensive transcriptional variability analysis reveals gene networks regulating seed oil content of Brassica napus
Authors (first, second and last of 23)
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Deciphering the impact of genetic variation on human polyadenylation using APARENT2
Authors (first, second and last of 4)
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The landscape of hervRNAs transcribed from human endogenous retroviruses across human body sites
Authors (first, second and last of 10)
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Folliculin-interacting protein FNIP2 impacts on overweight and obesity through a polymorphism in a conserved 3′ untranslated region
Authors (first, second and last of 16)
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scTAM-seq enables targeted high-confidence analysis of DNA methylation in single cells
Authors (first, second and last of 6)
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CRISPR-KRISPR: a method to identify on-target and random insertion of donor DNAs and their characterization in knock-in mice
Authors (first, second and last of 11)
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INSERT-seq enables high-resolution mapping of genomically integrated DNA using Nanopore sequencing
Authors (first, second and last of 6)
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ReadZS detects cell type-specific and developmentally regulated RNA processing programs in single-cell RNA-seq
Authors (first, second and last of 4)
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Significant variation in the performance of DNA methylation predictors across data preprocessing and normalization strategies
Authors (first, second and last of 4)
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Author Correction: Pooled extracellular receptor-ligand interaction screening using CRISPR activation
Authors (first, second and last of 4)
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Replication stress generates distinctive landscapes of DNA copy number alterations and chromosome scale losses
Authors (first, second and last of 12)
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