Volume 22, issue 1, December 2021
351 articles in this issue
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Author Correction: The SEQC2 epigenomics quality control (EpiQC) study
Authors (first, second and last of 57)
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An accessible, efficient and global approach for the large-scale sequencing of bacterial genomes
Authors (first, second and last of 19)
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Quantitative-enhancer-FACS-seq (QeFS) reveals epistatic interactions among motifs within transcriptional enhancers in developing Drosophila tissue
Authors (first, second and last of 6)
This is part of 1 collection:
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Hidden biases in germline structural variant detection
Authors (first, second and last of 11)
This is part of 1 collection:
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MultiMAP: dimensionality reduction and integration of multimodal data
Authors (first, second and last of 13)
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SCEPTRE improves calibration and sensitivity in single-cell CRISPR screen analysis
Authors (first, second and last of 5)
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Chronos: a cell population dynamics model of CRISPR experiments that improves inference of gene fitness effects
Authors (first, second and last of 8)
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A benchmark of structural variation detection by long reads through a realistic simulated model
Authors (first, second and last of 4)
This is part of 1 collection:
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splatPop: simulating population scale single-cell RNA sequencing data
Authors (first, second and last of 4)
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Reprogramming of RNA silencing triggered by cucumber mosaic virus infection in Arabidopsis
Authors
This is part of 1 collection:
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Benchmarking UMI-based single-cell RNA-seq preprocessing workflows
Authors (first, second and last of 7)
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Flimma: a federated and privacy-aware tool for differential gene expression analysis
Authors (first, second and last of 15)
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Microbial co-occurrence complicates associations of gut microbiome with US immigration, dietary intake and obesity
Authors (first, second and last of 17)
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A cis-regulatory-directed pipeline for the identification of genes involved in cardiac development and disease
Authors (first, second and last of 15)
This is part of 1 collection:
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Programmed genomic instability regulates neural transdifferentiation of human brain microvascular pericytes
Authors (first, second and last of 5)
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geneBasis: an iterative approach for unsupervised selection of targeted gene panels from scRNA-seq
Authors (first, second and last of 12)
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The SEQC2 epigenomics quality control (EpiQC) study
Authors (first, second and last of 57)
This is part of 1 collection:
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Single-cell characterization of CRISPR-modified transcript isoforms with nanopore sequencing
Authors (first, second and last of 5)
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Interferon inducible pseudouridine modification in human mRNA by quantitative nanopore profiling
Authors (first, second and last of 9)
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DropletQC: improved identification of empty droplets and damaged cells in single-cell RNA-seq data
Authors
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Functional enrichment of alternative splicing events with NEASE reveals insights into tissue identity and diseases
Authors (first, second and last of 11)
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Wheat in vivo RNA structure landscape reveals a prevalent role of RNA structure in modulating translational subgenome expression asymmetry
Authors (first, second and last of 14)
This is part of 1 collection:
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Heterochromatin: did H3K9 methylation evolve to tame transposons?
Authors
This is part of 1 collection:
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treekoR: identifying cellular-to-phenotype associations by elucidating hierarchical relationships in high-dimensional cytometry data
Authors (first, second and last of 5)
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recount3: summaries and queries for large-scale RNA-seq expression and splicing
Authors (first, second and last of 15)
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Landscape of transcription termination in Arabidopsis revealed by single-molecule nascent RNA sequencing
Authors (first, second and last of 13)
This is part of 1 collection:
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Roadblock: improved annotations do not necessarily translate into new functional insights
Authors (first, second and last of 4)
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Transcriptional landscape of highly lignified poplar stems at single-cell resolution
Authors (first, second and last of 12)
This is part of 1 collection:
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NMD abnormalities during brain development in the Fmr1-knockout mouse model of fragile X syndrome
Authors (first, second and last of 6)
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Resequencing of 388 cassava accessions identifies valuable loci and selection for variation in heterozygosity
Authors (first, second and last of 34)
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Chromatin spatial organization of wild type and mutant peanuts reveals high-resolution genomic architecture and interaction alterations
Authors (first, second and last of 11)
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Correction: Surfaceome CRISPR screen identifies OLFML3 as a rhinovirus-inducible IFN antagonist
Authors (first, second and last of 10)
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A systems genetics approach reveals PbrNSC as a regulator of lignin and cellulose biosynthesis in stone cells of pear fruit
Authors (first, second and last of 19)
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Accurate long-read de novo assembly evaluation with Inspector
Authors (first, second and last of 5)
This is part of 1 collection:
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ATRX regulates glial identity and the tumor microenvironment in IDH-mutant glioma
Authors (first, second and last of 9)
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Comprehensive characterization of single-cell full-length isoforms in human and mouse with long-read sequencing
Authors (first, second and last of 31)
This is part of 1 collection:
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TAD-like single-cell domain structures exist on both active and inactive X chromosomes and persist under epigenetic perturbations
Authors (first, second and last of 4)
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An explainable artificial intelligence approach for decoding the enhancer histone modifications code and identification of novel enhancers in Drosophila
Authors (first, second and last of 4)
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IRFinder-S: a comprehensive suite to discover and explore intron retention
Authors (first, second and last of 6)
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The Sequencing Quality Control 2 study: establishing community standards for sequencing in precision medicine
Authors (first, second and last of 5)
This is part of 1 collection:
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Lamin C is required to establish genome organization after mitosis
Authors (first, second and last of 6)
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High-quality reference genome sequences of two coconut cultivars provide insights into evolution of monocot chromosomes and differentiation of fiber content and plant height
Authors (first, second and last of 24)
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Sex without crossing over in the yeast Saccharomycodes ludwigii
Authors (first, second and last of 9)
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Enhanced chromatin accessibility contributes to X chromosome dosage compensation in mammals
Authors (first, second and last of 14)
